Parental gene:

RPS15A, ENSBTAG00000020733

Aliases:None
Description:40S ribosomal protein S15a [Source:UniProtKB/Swiss-Prot;Acc:Q76I82]
Organism:Cow (Bos taurus)
Coordinates:25:16531760..16537583(-)


>ENSBTAG00000020733
ATGGTGCGCATGAATGTCCTGGCCGATGCTCTCAAGAGTATCAACAATGCCGAAAAGAGAGGCAAACGCCAGGTCCTTAT
TAGGCCGTGCTCCAAAGTCATCGTCAGGTTTCTAACAGTGATGATGAAGCATGGTTACATTGGCGAATTTGAAATCATTG
ATGATCACAGGGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGCTAAATAAGTGTGGAGTGATCAGCCCTAGATTTGAT
GTGCAACTCAAAGATCTAGAAAAATGGCAGAATAACCTGCTCCCATCCCGTCAGTTTGGTTTCATTGTACTGACAACCTC
AGCTGGCATCATGGACCATGAAGAAGCAAGACGAAAACATACAGGAGGGAAAATCCTTGGATTCTTTTTCTAG

Library Parental gene expression (RPM)
ERP005899_liver 69 .43 RPM
ERP005899_muscle 657 .33 RPM
SRP017611_brain 16 .90 RPM
SRP017611_kidney 57 .55 RPM
SRP017611_liver 35 .19 RPM
SRP030211_testis 106 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 possible_ortholog 18 retrogenes
Callithrix jacchus ENSCJAG00000020071 possible_ortholog 6 retrogenes
Cavia porcellus ENSCPOG00000021695 possible_ortholog 12 retrogenes
Dasypus novemcinctus ENSDNOG00000008341 possible_ortholog 45 retrogenes
Dipodomys ordii ENSDORG00000001557 possible_ortholog 5 retrogenes
Equus caballus ENSECAG00000019293 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000010625 possible_ortholog 11 retrogenes
Homo sapiens ENSG00000134419 possible_ortholog 37 retrogenes
Gorilla gorilla ENSGGOG00000026299 possible_ortholog 32 retrogenes
Gadus morhua ENSGMOG00000005862 ortholog_many2many 1 retrogene
Latimeria chalumnae ENSLACG00000011476 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000026996 ortholog_one2many 13 retrogenes
Macropus eugenii ENSMEUG00000003956 ortholog_one2one 14 retrogenes
Microcebus murinus ENSMICG00000012241 possible_ortholog 20 retrogenes
Myotis lucifugus ENSMLUG00000005660 ortholog_one2one 15 retrogenes
Macaca mulatta ENSMMUG00000005593 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000005920 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000013424 possible_ortholog 12 retrogenes
Mus musculus ENSMUSG00000008683 possible_ortholog 29 retrogenes
Oryctolagus cuniculus ENSOCUG00000000179 possible_ortholog 25 retrogenes
Otolemur garnettii ENSOGAG00000013199 possible_ortholog 14 retrogenes
Procavia capensis ENSPCAG00000002934 possible_ortholog 5 retrogenes
Pongo abelii ENSPPYG00000007139 possible_ortholog 2 retrogenes
Pan troglodytes ENSPTRG00000007823 possible_ortholog 2 retrogenes
Pteropus vampyrus ENSPVAG00000002901 possible_ortholog 14 retrogenes
Rattus norvegicus ENSRNOG00000018320 ortholog_one2one 5 retrogenes
Sarcophilus harrisii ENSSHAG00000017293 possible_ortholog 6 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000025222 possible_ortholog 26 retrogenes
Tupaia belangeri ENSTBEG00000013626 ortholog_one2one 86 retrogenes
Tarsius syrichta ENSTSYG00000007627 possible_ortholog 45 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_3 97.69 100.00
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2. retro_btau_14 98.46 100.00
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3. retro_btau_57 97.69 100.00
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4. retro_btau_98 100.00 100.00
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5. retro_btau_171 98.46 100.00
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Download FASTA sequences of all ENSBTAG00000020733 retrocopies