Parental gene:

RPS15A, ENSMODG00000005920

Aliases:None
Description:ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]
Organism:Opossum (Monodelphis domestica)
Coordinates:6:57687439..57694418(-)


>ENSMODG00000005920
ATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAAAGCATAAACAATGCTGAGAAGCGAGGAAAACGCCAGGTTCTTAT
TAGGCCGTGCTCTAAAGTAATCGTCCGGTTCTTAACTGTGATGATGAAGCATGGTTATATTGGCGAATTTGAGATCATTG
ATGATCACAGAGCAGGAAAAATTGTTGTGAACCTCACGGGCAGATTAAACAAGTGTGGTGTAATCAGCCCCAGATTTGAT
GTTCAATTGAAAGATCTGGAAAAGTGGCAGAATAATCTGCTACCATCCCGTCAATTTGGGTTCATTGTGCTTACAACCTC
AGCTGGCATCATGGACCATGAGGAAGCAAGACGAAAACACACAGGAGGAAAAATCCTGGGATTCTTTTTCTAA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020733 ortholog_one2one 5 retrogenes
retro_btau_14, retro_btau_171, retro_btau_3, retro_btau_57, retro_btau_98,
Callithrix jacchus ENSCJAG00000020071 possible_ortholog 6 retrogenes
retro_cjac_120, retro_cjac_128, retro_cjac_170, retro_cjac_231, retro_cjac_359, retro_cjac_80,
Gadus morhua ENSGMOG00000005862 ortholog_many2many 1 retrogene
retro_gmor_16,
Latimeria chalumnae ENSLACG00000011476 ortholog_one2many 1 retrogene
retro_lcha_55,
Loxodonta africana ENSLAFG00000026996 ortholog_one2many 13 retrogenes
retro_lafr_1161, retro_lafr_1201, retro_lafr_210, retro_lafr_236, retro_lafr_247, retro_lafr_309, retro_lafr_323, retro_lafr_356, retro_lafr_571, retro_lafr_613, retro_lafr_629, retro_lafr_759, retro_lafr_956,
Macropus eugenii ENSMEUG00000003956 ortholog_one2one 14 retrogenes
retro_meug_1163, retro_meug_1214, retro_meug_1344, retro_meug_1582, retro_meug_1675, retro_meug_1803, retro_meug_184, retro_meug_1845, retro_meug_195, retro_meug_2169, retro_meug_340, retro_meug_520, retro_meug_729, retro_meug_809,
Myotis lucifugus ENSMLUG00000005660 ortholog_one2one 15 retrogenes
retro_mluc_1170, retro_mluc_1376, retro_mluc_1408, retro_mluc_1692, retro_mluc_2038, retro_mluc_2242, retro_mluc_2353, retro_mluc_2406, retro_mluc_2465, retro_mluc_2512, retro_mluc_2514, retro_mluc_263, retro_mluc_823, retro_mluc_824, retro_mluc_949,
Otolemur garnettii ENSOGAG00000013199 possible_ortholog 14 retrogenes
retro_ogar_102, retro_ogar_1254, retro_ogar_1302, retro_ogar_1361, retro_ogar_1636, retro_ogar_2241, retro_ogar_2361, retro_ogar_269, retro_ogar_2775, retro_ogar_3283, retro_ogar_3367, retro_ogar_563, retro_ogar_712, retro_ogar_87,
Pan troglodytes ENSPTRG00000007823 possible_ortholog 2 retrogenes
retro_ptro_289, retro_ptro_76,
Rattus norvegicus ENSRNOG00000018320 ortholog_one2one 5 retrogenes
retro_rnor_1808, retro_rnor_2080, retro_rnor_2586, retro_rnor_324, retro_rnor_378,
Tupaia belangeri ENSTBEG00000013626 ortholog_one2one 86 retrogenes
retro_tbel_1030, retro_tbel_1045, retro_tbel_1051, retro_tbel_1075, retro_tbel_1079, retro_tbel_1087, retro_tbel_1100, retro_tbel_1111, retro_tbel_1118, retro_tbel_1222, retro_tbel_1284, retro_tbel_1371, retro_tbel_1398, retro_tbel_143, retro_tbel_1431, retro_tbel_1436, retro_tbel_1470, retro_tbel_1499, retro_tbel_155, retro_tbel_1561, retro_tbel_1625, retro_tbel_1709, retro_tbel_1800, retro_tbel_1842, retro_tbel_1886, retro_tbel_1970, retro_tbel_1975, retro_tbel_1976, retro_tbel_2318, retro_tbel_235, retro_tbel_2394, retro_tbel_2395, retro_tbel_2403, retro_tbel_2552, retro_tbel_2656, retro_tbel_2686, retro_tbel_2734, retro_tbel_2779, retro_tbel_2794, retro_tbel_2871, retro_tbel_2904, retro_tbel_2909, retro_tbel_2921, retro_tbel_2977, retro_tbel_2982, retro_tbel_299, retro_tbel_2990, retro_tbel_3074, retro_tbel_3087, retro_tbel_3173, retro_tbel_3237, retro_tbel_3419, retro_tbel_3428, retro_tbel_3489, retro_tbel_3498, retro_tbel_3562, retro_tbel_3610, retro_tbel_3657, retro_tbel_3752, retro_tbel_3761, retro_tbel_379, retro_tbel_3791, retro_tbel_382, retro_tbel_3884, retro_tbel_4084, retro_tbel_4195, retro_tbel_4198, retro_tbel_4210, retro_tbel_4550, retro_tbel_4584, retro_tbel_4605, retro_tbel_4626, retro_tbel_4707, retro_tbel_477, retro_tbel_479, retro_tbel_501, retro_tbel_547, retro_tbel_641, retro_tbel_646, retro_tbel_713, retro_tbel_774, retro_tbel_78, retro_tbel_806, retro_tbel_813, retro_tbel_862, retro_tbel_989,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_83 79.23 100.00
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2. retro_mdom_717 80.17 93.08
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3. retro_mdom_1147 57.83 63.85
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4. retro_mdom_1626 63.71 94.62
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5. retro_mdom_1659 68.18 100.00
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6. retro_mdom_1852 61.07 100.00
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Download FASTA sequences of all ENSMODG00000005920 retrocopies