Parental gene:

RPS15A, ENSFCAG00000010625

Aliases:None
Description:ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]
Organism:Cat (Felis catus)
Coordinates:E3:28551157..28556221(+)


>ENSFCAG00000010625
ACAGCCATAATGGTGCGCATGAATGTCCTGGCAGATGCTCTCAAGAGCATTAACAATGCTGAAAAGAGAGGCAAACGCCA
GGTGCTTATTAGGCCATGCTCCAAAGTCATCGTGCGATTTCTGACTGTGATGATGAAGCATGTAGGTTACATTGGCGAAT
TTGAAATCATCGATGATCACAGAGCTGGGAAAATTGTTGTGAACCTCACAGGCAGGTTAAACAAGTGTGGAGTGATCAGC
CCCAGGTTTGATGTACAACTCAAAGATCTAGAAAAATGGCAGAATAATCTGCTCCCATCCCGCCAGTTTGGTTTCATTGT
ACTGACAACCTCAGCTGGCATCATGGACCATGAAGAAGCAAGACGAAAACACACAGGAGGGAAAATCCTGGGATTCTTTT
TCTAG

Library Parental gene expression (RPM)
SRP017611_brain 37 .65 RPM
SRP017611_kidney 191 .17 RPM
SRP017611_liver 117 .37 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020733 possible_ortholog 5 retrogenes
retro_btau_14, retro_btau_171, retro_btau_3, retro_btau_57, retro_btau_98,
Callithrix jacchus ENSCJAG00000020071 possible_ortholog 6 retrogenes
retro_cjac_120, retro_cjac_128, retro_cjac_170, retro_cjac_231, retro_cjac_359, retro_cjac_80,
Gadus morhua ENSGMOG00000005862 ortholog_many2many 1 retrogene
retro_gmor_16,
Latimeria chalumnae ENSLACG00000011476 ortholog_one2many 1 retrogene
retro_lcha_55,
Loxodonta africana ENSLAFG00000026996 ortholog_one2many 13 retrogenes
retro_lafr_1161, retro_lafr_1201, retro_lafr_210, retro_lafr_236, retro_lafr_247, retro_lafr_309, retro_lafr_323, retro_lafr_356, retro_lafr_571, retro_lafr_613, retro_lafr_629, retro_lafr_759, retro_lafr_956,
Mustela putorius furo ENSMPUG00000013424 ortholog_one2one 12 retrogenes
retro_mputfur_1022, retro_mputfur_1124, retro_mputfur_1165, retro_mputfur_1296, retro_mputfur_1404, retro_mputfur_1417, retro_mputfur_1505, retro_mputfur_43, retro_mputfur_448, retro_mputfur_589, retro_mputfur_591, retro_mputfur_772,
Mus musculus ENSMUSG00000008683 ortholog_one2one 29 retrogenes
retro_mmus_1133, retro_mmus_1337, retro_mmus_1863, retro_mmus_2022, retro_mmus_2086, retro_mmus_2108, retro_mmus_2428, retro_mmus_2461, retro_mmus_2515, retro_mmus_2580, retro_mmus_2608, retro_mmus_2609, retro_mmus_2680, retro_mmus_2779, retro_mmus_2842, retro_mmus_3161, retro_mmus_3293, retro_mmus_3304, retro_mmus_3348, retro_mmus_3352, retro_mmus_3442, retro_mmus_3482, retro_mmus_357, retro_mmus_408, retro_mmus_670, retro_mmus_757, retro_mmus_768, retro_mmus_816, retro_mmus_928,
Otolemur garnettii ENSOGAG00000013199 possible_ortholog 14 retrogenes
retro_ogar_102, retro_ogar_1254, retro_ogar_1302, retro_ogar_1361, retro_ogar_1636, retro_ogar_2241, retro_ogar_2361, retro_ogar_269, retro_ogar_2775, retro_ogar_3283, retro_ogar_3367, retro_ogar_563, retro_ogar_712, retro_ogar_87,
Procavia capensis ENSPCAG00000002934 ortholog_one2one 5 retrogenes
retro_pcap_113, retro_pcap_142, retro_pcap_304, retro_pcap_362, retro_pcap_41,
Pan troglodytes ENSPTRG00000007823 possible_ortholog 2 retrogenes
retro_ptro_289, retro_ptro_76,
Sarcophilus harrisii ENSSHAG00000017293 ortholog_one2one 6 retrogenes
retro_shar_311, retro_shar_555, retro_shar_619, retro_shar_720, retro_shar_736, retro_shar_764,
Tarsius syrichta ENSTSYG00000007627 ortholog_one2one 45 retrogenes
retro_tsyr_1017, retro_tsyr_1024, retro_tsyr_1049, retro_tsyr_1051, retro_tsyr_1151, retro_tsyr_124, retro_tsyr_1240, retro_tsyr_128, retro_tsyr_1336, retro_tsyr_1449, retro_tsyr_1500, retro_tsyr_1517, retro_tsyr_152, retro_tsyr_1562, retro_tsyr_1628, retro_tsyr_1669, retro_tsyr_1808, retro_tsyr_1814, retro_tsyr_184, retro_tsyr_1928, retro_tsyr_1959, retro_tsyr_2041, retro_tsyr_2137, retro_tsyr_2145, retro_tsyr_2164, retro_tsyr_258, retro_tsyr_271, retro_tsyr_274, retro_tsyr_275, retro_tsyr_284, retro_tsyr_289, retro_tsyr_292, retro_tsyr_332, retro_tsyr_420, retro_tsyr_422, retro_tsyr_449, retro_tsyr_538, retro_tsyr_588, retro_tsyr_595, retro_tsyr_630, retro_tsyr_631, retro_tsyr_68, retro_tsyr_687, retro_tsyr_72, retro_tsyr_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_9 94.66 97.76
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2. retro_fcat_34 83.90 88.06
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3. retro_fcat_37 89.31 97.76
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4. retro_fcat_125 74.05 97.76
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5. retro_fcat_655 70.80 98.51
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6. retro_fcat_665 88.72 99.25
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7. retro_fcat_879 59.54 97.01
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8. retro_fcat_1712 74.44 97.76
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9. retro_fcat_1745 75.00 76.87
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10. retro_fcat_1951 73.88 98.51
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11. retro_fcat_1966 66.91 98.51
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Download FASTA sequences of all ENSFCAG00000010625 retrocopies