RetrogeneDB - Parental gene ENSOCUG00000000179 details

                            
>ENSOCUG00000000179
ATGGTGCGCATGAACGTCCTGGCCGATGCTCTCAAGAGCATCAACAATGCCGAGAAGAGAGGCAAGCGCCAGGTTCTCAT

CAGGCCGTGCTCCAAAGTCATCGTCAGGTTTCTGACTGTGATGATGAAGCATGGTTACATTGGCGAGTTTGAAATCATTG

ACGATCACAGAGCTGGGAAGATCGTGGTGAACCTCACCGGCAGGTTAAACAAGTGCGGAGTGATCAGCCCCAGATTTGAC

GTGCAGTTGAAAGATCTAGAAAAATGGCAGAATAACCTGCTTCCATCCCGCCAGTTTGGTTTCATTGTACTGACAACCTC

AGCTGGCATCATGGACCATGAAGAAGCACGACGAAAACACACAGGAGGGAAGATCCTGGGATTCTTTTTCTAG

Library	Parental gene expression (RPM)
SRP017611_brain	93 .49 RPM
SRP017611_kidney	242 .24 RPM
SRP017611_liver	47 .71 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011083	ortholog_one2one	18 retrogenes	retro_amel_106, retro_amel_123, retro_amel_1489, retro_amel_1572, retro_amel_1575, retro_amel_1708, retro_amel_1770, retro_amel_1894, retro_amel_245, retro_amel_271, retro_amel_319, retro_amel_438, retro_amel_442, retro_amel_603, retro_amel_648, retro_amel_66, retro_amel_766, retro_amel_96,
Bos taurus	ENSBTAG00000020733	possible_ortholog	5 retrogenes	retro_btau_14, retro_btau_171, retro_btau_3, retro_btau_57, retro_btau_98,
Callithrix jacchus	ENSCJAG00000020071	ortholog_one2many	6 retrogenes	retro_cjac_120, retro_cjac_128, retro_cjac_170, retro_cjac_231, retro_cjac_359, retro_cjac_80,
Cavia porcellus	ENSCPOG00000021695	ortholog_one2one	12 retrogenes	retro_cpor_1031, retro_cpor_1087, retro_cpor_1103, retro_cpor_1334, retro_cpor_146, retro_cpor_403, retro_cpor_515, retro_cpor_557, retro_cpor_636, retro_cpor_730, retro_cpor_90, retro_cpor_926,
Dasypus novemcinctus	ENSDNOG00000008341	ortholog_one2one	45 retrogenes	retro_dnov_1029, retro_dnov_1031, retro_dnov_1053, retro_dnov_1060, retro_dnov_1079, retro_dnov_1197, retro_dnov_1246, retro_dnov_147, retro_dnov_1598, retro_dnov_1738, retro_dnov_1766, retro_dnov_1794, retro_dnov_1954, retro_dnov_1963, retro_dnov_2002, retro_dnov_2012, retro_dnov_2047, retro_dnov_2119, retro_dnov_2155, retro_dnov_2182, retro_dnov_2206, retro_dnov_2326, retro_dnov_2338, retro_dnov_2355, retro_dnov_2401, retro_dnov_2437, retro_dnov_2458, retro_dnov_2478, retro_dnov_2479, retro_dnov_2492, retro_dnov_2516, retro_dnov_2519, retro_dnov_2655, retro_dnov_2669, retro_dnov_2689, retro_dnov_462, retro_dnov_494, retro_dnov_505, retro_dnov_629, retro_dnov_653, retro_dnov_667, retro_dnov_686, retro_dnov_774, retro_dnov_785, retro_dnov_87,
Dipodomys ordii	ENSDORG00000001557	ortholog_one2one	5 retrogenes	retro_dord_165, retro_dord_455, retro_dord_496, retro_dord_51, retro_dord_582,
Equus caballus	ENSECAG00000019293	ortholog_one2one	2 retrogenes	retro_ecab_114, retro_ecab_485,
Homo sapiens	ENSG00000134419	ortholog_one2one	37 retrogenes	retro_hsap_1057, retro_hsap_1335, retro_hsap_1411, retro_hsap_1425, retro_hsap_164, retro_hsap_1695, retro_hsap_1769, retro_hsap_1932, retro_hsap_2020, retro_hsap_2087, retro_hsap_2117, retro_hsap_212, retro_hsap_2181, retro_hsap_2459, retro_hsap_2556, retro_hsap_2586, retro_hsap_3044, retro_hsap_3409, retro_hsap_3456, retro_hsap_351, retro_hsap_3514, retro_hsap_3539, retro_hsap_3590, retro_hsap_370, retro_hsap_374, retro_hsap_3904, retro_hsap_3987, retro_hsap_4033, retro_hsap_4071, retro_hsap_4300, retro_hsap_4802, retro_hsap_509, retro_hsap_629, retro_hsap_636, retro_hsap_685, retro_hsap_727, retro_hsap_861,
Gorilla gorilla	ENSGGOG00000026299	ortholog_one2one	32 retrogenes	retro_ggor_109, retro_ggor_1270, retro_ggor_1406, retro_ggor_1532, retro_ggor_1599, retro_ggor_1619, retro_ggor_1631, retro_ggor_1642, retro_ggor_1728, retro_ggor_2242, retro_ggor_2332, retro_ggor_2376, retro_ggor_2390, retro_ggor_248, retro_ggor_2631, retro_ggor_2706, retro_ggor_283, retro_ggor_2874, retro_ggor_2989, retro_ggor_3075, retro_ggor_340, retro_ggor_365, retro_ggor_384, retro_ggor_466, retro_ggor_469, retro_ggor_551, retro_ggor_557, retro_ggor_558, retro_ggor_588, retro_ggor_614, retro_ggor_835, retro_ggor_85,
Gadus morhua	ENSGMOG00000005862	ortholog_many2many	1 retrogene	retro_gmor_16,
Latimeria chalumnae	ENSLACG00000011476	ortholog_one2many	1 retrogene	retro_lcha_55,
Loxodonta africana	ENSLAFG00000026996	ortholog_one2many	13 retrogenes	retro_lafr_1161, retro_lafr_1201, retro_lafr_210, retro_lafr_236, retro_lafr_247, retro_lafr_309, retro_lafr_323, retro_lafr_356, retro_lafr_571, retro_lafr_613, retro_lafr_629, retro_lafr_759, retro_lafr_956,
Microcebus murinus	ENSMICG00000012241	ortholog_one2one	20 retrogenes	retro_mmur_1007, retro_mmur_1051, retro_mmur_1112, retro_mmur_113, retro_mmur_1256, retro_mmur_1459, retro_mmur_1536, retro_mmur_185, retro_mmur_239, retro_mmur_250, retro_mmur_261, retro_mmur_297, retro_mmur_319, retro_mmur_486, retro_mmur_536, retro_mmur_570, retro_mmur_587, retro_mmur_772, retro_mmur_788, retro_mmur_984,
Macaca mulatta	ENSMMUG00000005593	ortholog_one2one	3 retrogenes	retro_mmul_112, retro_mmul_293, retro_mmul_486,
Otolemur garnettii	ENSOGAG00000013199	ortholog_one2one	14 retrogenes	retro_ogar_102, retro_ogar_1254, retro_ogar_1302, retro_ogar_1361, retro_ogar_1636, retro_ogar_2241, retro_ogar_2361, retro_ogar_269, retro_ogar_2775, retro_ogar_3283, retro_ogar_3367, retro_ogar_563, retro_ogar_712, retro_ogar_87,
Pongo abelii	ENSPPYG00000007139	ortholog_one2one	2 retrogenes	retro_pabe_2008, retro_pabe_34,
Pan troglodytes	ENSPTRG00000007823	ortholog_one2one	2 retrogenes	retro_ptro_289, retro_ptro_76,
Pteropus vampyrus	ENSPVAG00000002901	ortholog_one2one	14 retrogenes	retro_pvam_102, retro_pvam_1132, retro_pvam_1238, retro_pvam_1341, retro_pvam_344, retro_pvam_362, retro_pvam_364, retro_pvam_381, retro_pvam_383, retro_pvam_494, retro_pvam_50, retro_pvam_573, retro_pvam_834, retro_pvam_943,
Rattus norvegicus	ENSRNOG00000018320	possible_ortholog	5 retrogenes	retro_rnor_1808, retro_rnor_2080, retro_rnor_2586, retro_rnor_324, retro_rnor_378,
Ictidomys tridecemlineatus	ENSSTOG00000025222	ortholog_one2one	26 retrogenes	retro_itri_1013, retro_itri_1037, retro_itri_1092, retro_itri_1103, retro_itri_1213, retro_itri_1297, retro_itri_1407, retro_itri_1493, retro_itri_1504, retro_itri_1516, retro_itri_1726, retro_itri_205, retro_itri_255, retro_itri_443, retro_itri_452, retro_itri_475, retro_itri_491, retro_itri_498, retro_itri_536, retro_itri_624, retro_itri_692, retro_itri_716, retro_itri_829, retro_itri_839, retro_itri_844, retro_itri_927,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ocun_92	94.62	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ocun_144	85.83	97.69	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ocun_239	83.75	66.12	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ocun_253	71.56	90.08	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ocun_540	75.26	79.34	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ocun_559	82.68	96.92	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ocun_581	56.06	99.23	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ocun_587	59.55	67.69	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ocun_594	65.89	97.69	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ocun_634	55.32	70.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ocun_748	83.97	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ocun_780	77.86	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_ocun_806	69.57	87.69	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_ocun_1018	78.18	83.85	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_ocun_1067	84.78	75.21	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_ocun_1078	71.72	73.85	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_ocun_1154	81.93	63.08	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_ocun_1157	58.82	51.54	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_ocun_1168	53.41	72.73	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_ocun_1181	58.91	97.69	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_ocun_1310	91.54	100.00	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_ocun_1343	98.15	83.08	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_ocun_1384	83.97	100.00	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_ocun_1435	61.46	76.86	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_ocun_1600	63.53	64.62	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSOCUG00000000179 retrocopies

Parental gene:	RPS15A, ENSOCUG00000000179
Aliases:	None
Description:	ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]
Organism:	*Rabbit (Oryctolagus cuniculus)*
Coordinates:	6:9241349..9301183(+)

Parental gene:

RPS15A, ENSOCUG00000000179