RetrogeneDB ID:

retro_mluc_67

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429768:24328374..24330255(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000017315
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:TKT
Ensembl ID:ENSMLUG00000000943
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_67
GCCGTGGCCGACGACCCCAAGCCCGACGCGGACACCGTGCAGGTGCTGCGGGACCTGGCCAACCGCCTGCGGATCCACTC
CATCCGGGCCACGTGCGCCTCCAGCTCCGGCCACCCCACGTCGTGCTGCAGCGCCGCCGAGATCATGTCGGTGCTCTTCT
TCCACACGATGCGGTACAAGCAGGCGGAGCCCGAACACCCGGACAACGACCGGTTCGTCCTCTCCAAGGGCCACGCCGCG
CCCATCCTCTACGCCGCCTGGGCGGAGGTGGGCGACATCAGCGAGGCGGACCTGCTGAGCCTGCGCAAGATCCACAGTGA
CCTGGAGGGGCATCCCACGCCGCGGCTGGCCTTCGTGGACGTGGCGACCGGGTCGCTGGGGCAGGGGCTGGGGGCCGCGT
GCGGCATGGCCTACACCGGCAAGTACTTCGACAAGGCCAGCTACCGCGTCTTCTGCCTCCTGGGCGACGGCGAGTCCTCC
GAGGGCTCCATCTGGGAGGCGCTGGCCTTCGCCTCCCACTACAGCCTGGACAACCTGGTGGCCGTCTTCGACGTGAACCG
CCTCGGGCAGAGCGGGCCCACGCCCCTGGAGCACTGCACCGACATGTACCAGAAGCGCTGCGAGGCCTTCGGCTGGACCA
CCTACCTGGTGGACGGCCACGACGTGGAGGCCCTGTGCCACGCCTTCTGGCAGGCGGCGCGGGTGAAGAACAAGCCCACG
GCCATCGTCTCCAAGACCTTCAAGGGCCGGGGCATCCCGAACGTGGAGGACGCCGAGAACTGGCACGGGAAGCCGATGCC
CAAGGAGAGAGCCGACGCCATCATCAAGCTGATTGAGAGCCAGATCCAGACCAACCGGAACCTGACGCCGAGGCCGCCCG
TGGAGGACTCGCCCCGCATCAGCATCAAGAACATCAAGATGGCCTCGCTGCCCGCTTACAAAGTGGGGGACAAGGTGGCG
ACCGACAGGGCCTACGGCTCGGCTCTGGCCAAACTGGGCCATGCCAATAAAAGGGTCATTGTCCTGGACGGGGACGCGAA
GAACGCCACCTTTTCCGAGATGTTCAAGAAGGAGCACCCCGAGCGTTTCATCGAGTGCTTCATGGCCGAGCAAAACATGG
TGAGCGTGGCGCTGGGCTGTGCCACGCGCGACCGCACCGTCGCTTTTGTCAGCACCTTCGCGGCCTATTTGACCCGAGCG
TTTGATCATATCCGGATGGGGGCCATCTCCCAAACCAACATCAACCTGGTTGGTTCCTACTGCGGGCTCTCCATTGGTGA
GGACGGACCCTCCCAGATGGCCCTGGAGGACCTAGCCATGTTCCGGAGCATCCCCAACTGCACTGTGTTCTACCCAAGCG
ATGCCGTCTCGACAGAGCACGCTGTATGCCTGGCCGCCAATGCCAAAGGCATGTGCTTCATTCGGACTGGCCCACCAGAA
ATTGCAGTTATTTACACCCCAGAAGAACATTTTGAGATTGGACAGGCCAAGGTCATCCGCCACAGTGCCAATGACAAAGT
CACAGTAATTGGAGCCGGGGTTACTCTGCATGAAGCCTTAGCAGCTGCTGACCGTCTTTCTGAACAAGATATTTCCATCC
GTGTCATTGACCCATTTACCATTAAACCCCTGGATGCTGCCACCATCATCTCCAATGCAAAAGCTACAGGCGGTCGGGTT
ATCACAGTGGAAGATCACTACCGGGAAGGTGGCATTGGAGAAGCAGTATGTGCCGCTGTGTCTGGGGAGCCTGACATCCT
TGTTCATCAGCTGGCAGTGTCAGGAGTCCCTCGAAGTGGGAAACCTTGCGAATTGCTGGATATGTTTGGAATCAGTGCCA
GACATATCATAGCAGCAGTGAAACACACTTTAATGAATTAA

ORF - retro_mluc_67 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.81 %
Parental protein coverage: 98.23 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalKPDQQKLQALKDTAT-LRISSIQATTAAGCHSHPTSCCSAAEIMSVLFFHTMRYKSQDPRNAHNDRFVLS
KPD....Q.L.D.A..LRI.SI.AT.A.....HPTSCCSAAEIMSVLFFHTMRYK...P....NDRFVLS
RetrocopyKPDADTVQVLRDLANRLRIHSIRATCASSS-GHPTSCCSAAEIMSVLFFHTMRYKQAEPEHPDNDRFVLS
ParentalKGHAAPILYAVWAEAGFLPEAELLNLRKISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDK
KGHAAPILYA.WAE.G...EA.LL.LRKI.SDL.GHP.P..AF.DVATGSLGQGLGAACGMAYTGKYFDK
RetrocopyKGHAAPILYAAWAEVGDISEADLLSLRKIHSDLEGHPTPRLAFVDVATGSLGQGLGAACGMAYTGKYFDK
ParentalASYRVYCLLGDGELSEGSVWEAMAFAGIYKLDNLVAILDINRLGQSEPAPLQHQLDVYQKRCEAFGWHTV
ASYRV.CLLGDGE.SEGS.WEA.AFA..Y.LDNLVA..D.NRLGQS.P.PL.H..D.YQKRCEAFGW.T.
RetrocopyASYRVFCLLGDGESSEGSIWEALAFASHYSLDNLVAVFDVNRLGQSGPTPLEHCTDMYQKRCEAFGWTTY
ParentalIVNGHSVEELCKAFSQA---KHQPTAIIAKTFKGRGISGVEDKESWHGKPLPKNMADQVIQEIQSQIQSK
.V.GH.VE.LC.AF.QA...K..PTAI..KTFKGRGI..VED.E.WHGKP.PK..AD..I..I.SQIQ..
RetrocopyLVDGHDVEALCHAFWQAARVKNKPTAIVSKTFKGRGIPNVEDAENWHGKPMPKERADAIIKLIESQIQTN
ParentalKKILATPPQEDAPSVDITNIRMPTPPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSDLF
......PP.ED.P...I.NI.M...P.YKVGDK.AT..AYG.ALAKLGHA..R.I.LDGD.KN.TFS..F
RetrocopyRNLTPRPPVEDSPRISIKNIKMASLPAYKVGDKVATDRAYGSALAKLGHANKRVIVLDGDAKNATFSEMF
ParentalKKEHPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFYTRAFDQIRMAAISESNINLCGSHCGVSI
KKEHP.RFIEC..AEQNMVS.A.GCATR.RTV.F.STFAA..TRAFD.IRM.AIS..NINL.GS.CG.SI
RetrocopyKKEHPERFIECFMAEQNMVSVALGCATRDRTVAFVSTFAAYLTRAFDHIRMGAISQTNINLVGSYCGLSI
ParentalGEDGPSQMALEDLAMFRSVPMSTVFYPSDGVSTEKAVELAANTKGICFIRTSRPENAIIYSNNEDFQIGQ
GEDGPSQMALEDLAMFRS.P..TVFYPSD.VSTE.AV.LAAN.KG.CFIRT..PE.A.IY...E.F.IGQ
RetrocopyGEDGPSQMALEDLAMFRSIPNCTVFYPSDAVSTEHAVCLAANAKGMCFIRTGPPEIAVIYTPEEHFEIGQ
ParentalAKVVLKSQDDQVTVIGAGVTLHEALAAADLLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVED
AKV...S..D.VTVIGAGVTLHEALAAAD.L....I.IRV.DPFTIKPLD...I...A.AT.GR..TVED
RetrocopyAKVIRHSANDKVTVIGAGVTLHEALAAADRLSEQDISIRVIDPFTIKPLDAATIISNAKATGGRVITVED
ParentalHYYEGGIGEAVSSAVVGEPGVTVTRLAVSQVPRSGKPAELLKMFGIDKDAIVQAVK
HY.EGGIGEAV..AV.GEP...V..LAVS.VPRSGKP.ELL.MFGI....I..AVK
RetrocopyHYREGGIGEAVCAAVSGEPDILVHQLAVSGVPRSGKPCELLDMFGISARHIIAAVK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_67 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000037581 retrocopy
retro_btau_176,
Callithrix jacchus ENSCJAG000000072531 retrocopy
retro_cjac_2128,
Cavia porcellus ENSCPOG000000000721 retrocopy
retro_cpor_45,
Dipodomys ordii ENSDORG000000013921 retrocopy
retro_dord_329,
Homo sapiens ENSG000001639311 retrocopy
retro_hsap_47,
Macropus eugenii ENSMEUG000000053123 retrocopies
retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus ENSMLUG00000000943 1 retrocopy
retro_mluc_67 ,
Macaca mulatta ENSMMUG000000144331 retrocopy
retro_mmul_74,
Mus musculus ENSMUSG000000219571 retrocopy
retro_mmus_220,
Oryctolagus cuniculus ENSOCUG000000159042 retrocopies
retro_ocun_319, retro_ocun_62,
Otolemur garnettii ENSOGAG000000169111 retrocopy
retro_ogar_5,
Ochotona princeps ENSOPRG000000098911 retrocopy
retro_opri_10,
Pan troglodytes ENSPTRG000000150241 retrocopy
retro_ptro_126,
Pteropus vampyrus ENSPVAG000000162831 retrocopy
retro_pvam_352,
Rattus norvegicus ENSRNOG000000160641 retrocopy
retro_rnor_146,
Sarcophilus harrisii ENSSHAG000000173491 retrocopy
retro_shar_827,
Sus scrofa ENSSSCG000000214081 retrocopy
retro_sscr_996,
Tupaia belangeri ENSTBEG000000121141 retrocopy
retro_tbel_3510,
Takifugu rubripes ENSTRUG000000030091 retrocopy
retro_trub_23,


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