Parental gene:

TKT, ENSOCUG00000015904

Aliases:None
Description:transketolase [Source:HGNC Symbol;Acc:11834]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:9:20184802..20207587(-)


>ENSOCUG00000015904
ATGGAAGGCTACCACAAACCCGACCAGCAGAAGCTGCAGGCCCTGAAGGACACGGCCAACCGGCTGCGCATCAGCTCCAT
CCAGGCCACCACCGCGGCGGGCTCGGGCCACCCCACATCATGCTGCAGCGCGGCGGAGATCATGGCCGTACTCTTCTTCC
ACACCATGCGGTACAAGGCCCAGGACCCCCGGAACCCTCACAATGACCGCTTTATACTCTCCAAGGGCCACGCAGCTCCC
ATCCTGTATGCCGTCTGGGCTGAAGCTGGCTACCTGCCCGAGGCAGAGCTGCTGAACCTGAGGAAGATCAGCTCCGACCT
GGACGGGCACCCTGTCCCAAAACAAGCTTTCACAGACGTGGCCACTGGCTCCCTGGGCCAGGGCCTCGGGGCCGCGTGCG
GGATGGCCTACACCGGCAAGTACTTCGACAAAGCCAGCTACCGAGTCTATTGCCTGCTGGGAGACGGAGAGCTGTCCGAA
GGCTCCGTGTGGGAGGCCATGGCCTTTGCCAGCTTCTACAAGCTGGACAACCTCGTCGCCATTCTTGATGTCAACCGCCT
GGGCCAGAGCGACCCTGCCCCTCTGCAGCACCAGTTGGACGTCTACCAGAAGCGCTGCGAGGCCTTTGGCTGGCACACCA
TCATCGTGGATGGACACAGCGTGGAGGAGCTGTGCAAGGCCTTTGGCCAGGCTAAGCACCAGCCCACAGCCATCATCGCC
AAGACCTTCAAAGGCCGCGGAATTACAGGGATAGAAGATAAGGAGTCCTGGCATGGGAAACCCCTCCCCAAAAACATGGC
CGATCAGGTCATCCAGGAAATCTACAGCCAGATCCAGAGCAAAAAGAAGATCCTGGCGACGCCCCCGCAGGAGGATGCCC
CCTCGGTGGACATCAGCAACATCCGCATGCCCACCCCGCCCAGCTACAAAGTCGGGGACAAGATAGCCACCCGCAAGGCC
TATGGGCAGGCCCTGGCCAAACTGGGCCACGCCAGTGACCGCATCATCGCCCTGGATGGGGACACCAAGAATTCCACCTT
CTCGGATCTCTTCAAAAAGGAGCACCCAGACCGCTTCATCGAGTGCTACATTGCCGAGCAGAACATGGTGAGCGTCGCTG
TGGGCTGTGCCACGCGCAACAGGACGGTACCCTTCTGTAGCTCTTTCGCCGCCTTCTTCACACGGGCCTTTGACCAGATC
CGCATGGCGGCTATCTCCGAGAGCAACATCAACGTGTGCGGCTCCCACTGCGGAGTGTCCATCGGGGAAGATGGGCCCTC
TCAGATGGCCCTGGAAGACTTGGCCATGTTCCGCTCCATCCCCATGTCAACTGTCTTTTACCCGAGTGACGCAGTCGCTA
CAGAGAAGGCAGTGGAATTAGCAGCCAATACAAAGGGCATCTGCTTCATCCGGACCAGCCGCCCGGAAAACGCCATCATC
TACAACAACAGTGAGGATTTCCAGGTTGGACAAGGCAAGGTGGTCCTGAAGAGCAAGGATGACCAGGTGACCGTGGTCGG
GGCTGGGGTGACCCTGCACGAGGCCTTGGCTGCCGCCGAGCTGCTAAAGAAAGAGAGGATCAGCATCCGCGTGGTGGACC
CCTTCACCATCAAGCCCCTGGACAGGAAGCTCATCCTGGACAGTGCCCGTGCCACCAAGGGCAGAATCCTCACCGTGGAG
GACCACTATTACGAAGGTGGCATAGGGGAGGCGGTGTCCACTGCAGTAGTAGGCGAGCCTGGTGTCACTGTCGCCCGCCT
GGCTGTGGGCCAGGTACCAAGAAGCGGGAAGCCGGCCGAGCTGCTGAGGATGTTCGGCATCGACAAGGACGCCATCGCGC
AAGCTGTGAGGGGCCTGGTGGCCAAGGCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 107 .89 RPM
SRP017611_kidney 100 .14 RPM
SRP017611_liver 104 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003758 ortholog_one2one 1 retrogene
retro_btau_176,
Callithrix jacchus ENSCJAG00000007253 ortholog_one2one 1 retrogene
retro_cjac_2128,
Cavia porcellus ENSCPOG00000000072 ortholog_one2one 1 retrogene
retro_cpor_45,
Dipodomys ordii ENSDORG00000001392 ortholog_one2one 1 retrogene
retro_dord_329,
Homo sapiens ENSG00000163931 ortholog_one2one 1 retrogene
retro_hsap_47,
Macropus eugenii ENSMEUG00000005312 ortholog_one2one 3 retrogenes
retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus ENSMLUG00000000943 ortholog_one2one 1 retrogene
retro_mluc_67,
Macaca mulatta ENSMMUG00000014433 ortholog_one2one 1 retrogene
retro_mmul_74,
Mus musculus ENSMUSG00000021957 ortholog_one2one 1 retrogene
retro_mmus_220,
Otolemur garnettii ENSOGAG00000016911 ortholog_one2one 1 retrogene
retro_ogar_5,
Ochotona princeps ENSOPRG00000009891 ortholog_one2one 1 retrogene
retro_opri_10,
Pan troglodytes ENSPTRG00000015024 ortholog_one2one 1 retrogene
retro_ptro_126,
Pteropus vampyrus ENSPVAG00000016283 ortholog_one2one 1 retrogene
retro_pvam_352,
Rattus norvegicus ENSRNOG00000016064 ortholog_one2many 1 retrogene
retro_rnor_146,
Sarcophilus harrisii ENSSHAG00000017349 ortholog_one2one 1 retrogene
retro_shar_827,
Sus scrofa ENSSSCG00000021408 ortholog_one2one 1 retrogene
retro_sscr_996,
Tupaia belangeri ENSTBEG00000012114 ortholog_one2one 1 retrogene
retro_tbel_3510,
Takifugu rubripes ENSTRUG00000003009 ortholog_one2many 1 retrogene
retro_trub_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_62 65.57 92.30
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2. retro_ocun_319 53.75 61.96
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Download FASTA sequences of all ENSOCUG00000015904 retrocopies