Parental gene:

TKT, ENSBTAG00000003758

Aliases:None
Description:transketolase [Source:RefSeq peptide;Acc:NP_001003906]
Organism:Cow (Bos taurus)
Coordinates:22:48264510..48288061(+)


>ENSBTAG00000003758
ATGGAGGCCTACCATAAGCCTGATCAGCAGAAGCTGCAGGCCCTGAAGGACACGGCCAACCGCCTGCGTATCAGCTCCAT
CCAAGCCACCACGGCGGCCGGATCGGGCCACCCCACGTCATGCTGCAGCGCTGCTGAGATCATGGCTGTCCTCTTCTTCC
ACACCATGCGCTACAAGGCCCTGGATCCCCGGAACCCTCACAACGACCGCTTTGTTCTCTCCAAGGGCCATGCGGCACCC
ATCCTGTATGCCGTCTGGGCTGAAGCTGGCTTCCTGCCGGAGTCAGAGCTGCTGAATCTGAGGAAGATCAGCTCCGACTT
GGACGGGCACCCTGTCCCGAAACAAGCCTTCACCGATGTGGCCACTGGCTCCCTGGGCCAGGGCCTTGGAGCCGCTTGCG
GGATGGCCTACACAGGCAAATACTTCGACAAAGCCAGCTACCGGGTCTATTGCATGCTGGGAGACGGGGAGCTGTCAGAG
GGCTCCGTGTGGGAGGCCATGGCCTTCGCCAGCATCTACAAGCTGGACAACCTTGTCGCCATCCTTGACATCAACCGCCT
GGGCCAGAGTGACCCTGCCCCGCTGCAGCACCAGATGGACATCTACCAGAAGCGCTGCGAGGCCTTCGGTTGGAACGCTG
TCATCGTAGATGGGCACAGCGTGGAGGAACTGTGCAAGGCCTTCGGGCAGGTGAAGAACCAGCCAACAGCCATCATTGCC
AAGACCTTCAAGGGCCGAGGCATCACAGGGATAGAAGATAAGGAGTCTTGGCATGGGAAGCCCCTCCCCAAAAATATGGC
CGATCAGATCATCCAGGAAATCTCCGGTCAGATCCAGAGCAAGAAGAAGATCCTGGCGACCCCCCCAGAGGAGGACGCCC
CCTCAGTGGACATCACCAACATCCGAATGCCCACCCCACCCAACTACAAAGTTGGGGACAAGATAGCTACCCGCAAGGCC
TACGGACAGGCCCTGGCCAAGCTGGGTCATGCCAGCAACCGCATCATTGCCCTGGATGGGGACACCAAGAACTCCACCTT
CTCAGAACTCTTCAAAAAGGAGCACCCGGACCGTTTCATTGAGTGTTACATTGCTGAGCAGAACATGGTGAGCATCGCCG
TGGGCTGTGCCACACGCGACAGGACGGTACCCTTCTGCAGCACCTTCGCAGCCTTCTTTACACGGGCCTTCGACCAGATT
CGCATGGCAGCCATCTCCGAGAGCAACATCAACCTCTGCGGCTCCCACTGCGGCGTGTCCATTGGAGAAGACGGGCCCTC
CCAGATGGCCCTGGAAGATCTGGCCATGTTTCGGTCTATCCCCACGTCAACTGTCTTTTACCCAAGTGATGGGGTGGCTA
CGGAGAAGGCAGTAGAATTAGCAGCCAATACAAAGGGTATCTGCTTCATCCGGACCAGCCGCCCAGAAAATGCCATCATC
TACAACAACAATGAAGATTTCCAAATCGGACAAGCCAAGGTGGTCCTGAAGAACAAGGATGACCAGGTGACTGTGATTGG
TGCCGGGGTGACCCTGCACGAGGCTTTGGCAGCTGCTGACCTGCTGAAGAGAGAGAAGATCAACATTCGCGTATTGGACC
CTTTCACCATCAAGCCCCTGGATAAGAAGCTCATTCTTGACAGTGCCCGTGCTACCAAGGGCAGGATCCTCACTGTGGAG
GACCACTACTATGAAGGTGGCATAGGTGAGGCAGTGGCCTCTGCAGTTGTGGGAGAGCCTGGCGTCACTGTCACCCGCCT
GGCAGTCAGCCAGGTGCCCAGAAGTGGGAAACCAGCGGAGCTGCTGAAGATGTTTGGCATTGACAGGGATGCCATCGCGC
AGGCCGTGCGGGGCCTGGTGACCAGGGCCTAG

Library Parental gene expression (RPM)
ERP005899_liver 16 .73 RPM
ERP005899_muscle 358 .97 RPM
SRP017611_brain 110 .77 RPM
SRP017611_kidney 143 .97 RPM
SRP017611_liver 34 .36 RPM
SRP030211_testis 49 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007253 ortholog_one2one 1 retrogene
retro_cjac_2128,
Cavia porcellus ENSCPOG00000000072 ortholog_one2one 1 retrogene
retro_cpor_45,
Dipodomys ordii ENSDORG00000001392 ortholog_one2one 1 retrogene
retro_dord_329,
Homo sapiens ENSG00000163931 ortholog_one2one 1 retrogene
retro_hsap_47,
Macropus eugenii ENSMEUG00000005312 ortholog_one2one 3 retrogenes
retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus ENSMLUG00000000943 ortholog_one2one 1 retrogene
retro_mluc_67,
Macaca mulatta ENSMMUG00000014433 ortholog_one2one 1 retrogene
retro_mmul_74,
Mus musculus ENSMUSG00000021957 ortholog_one2one 1 retrogene
retro_mmus_220,
Oryctolagus cuniculus ENSOCUG00000015904 ortholog_one2one 2 retrogenes
retro_ocun_319, retro_ocun_62,
Otolemur garnettii ENSOGAG00000016911 ortholog_one2one 1 retrogene
retro_ogar_5,
Ochotona princeps ENSOPRG00000009891 ortholog_one2one 1 retrogene
retro_opri_10,
Pan troglodytes ENSPTRG00000015024 ortholog_one2one 1 retrogene
retro_ptro_126,
Pteropus vampyrus ENSPVAG00000016283 ortholog_one2one 1 retrogene
retro_pvam_352,
Rattus norvegicus ENSRNOG00000016064 ortholog_one2many 1 retrogene
retro_rnor_146,
Sarcophilus harrisii ENSSHAG00000017349 ortholog_one2one 1 retrogene
retro_shar_827,
Sus scrofa ENSSSCG00000021408 ortholog_one2one 1 retrogene
retro_sscr_996,
Tupaia belangeri ENSTBEG00000012114 ortholog_one2one 1 retrogene
retro_tbel_3510,
Takifugu rubripes ENSTRUG00000003009 ortholog_one2many 1 retrogene
retro_trub_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_176 67.75 97.91
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Download FASTA sequences of all ENSBTAG00000003758 retrocopies