Parental gene:

Tkt, ENSRNOG00000016064

Aliases:None
Description:transketolase [Source:RefSeq peptide;Acc:NP_072114]
Organism:Rat (Rattus norvegicus)
Coordinates:16:6543526..6568461(+)


>ENSRNOG00000016064
ATGGATCCAGTGAGACAGATCCAGTGCGACCGTGAAGGCAAACGCTTTCCGTTCCTCTCAGCTCCACCAGCTTCCACGTC
CTCGCCCGACCGCGCCATGGAGGGTTACCATAAGCCAGATCAGCAGAAGCTCCAGGCCCTGAAGGACACAGCCAATCGCC
TGCGCATCAGCTCCATCCAGGCCACCACCGCGGCAGGCTCGGGACACCCCACATCATGCTGCAGCGCTGCCGAGATCATG
GCTGTCCTGTTTTTCCATACCATGCGCTACAAGGCCCTGGATCCCCGAAACCCTCACAATGATCGCTTTGTGCTCTCCAA
GGGCCATGCAGCTCCCATCTTATATGCAGTCTGGGCTGAAGCTGGCTTCCTGCCTGAGGCAGAGCTGCTGAACCTGAGGA
AAATCAGCTCTGACTTGGATGGGCATCCTGTCCCGAAACAAGCCTTCACCGATGTGGCCACTGGCTCCCTGGGCCAGGGG
CTGGGAGCTGCGTGCGGGATGGCATACACAGGCAAATACTTCGACAAAGCCAGCTACCGAGTCTATTGCATGCTGGGAGA
CGGGGAGGTGTCCGAGGGCTCCGTTTGGGAGGCCATGGCCTTCGCTGGAATTTACAAGCTGGACAACCTCGTTGCCATTT
TTGACATCAACCGTCTGGGCCAGAGCGACCCAGCCCCGCTGCAGCACCAAGTGGACGTCTACCAGAAGCGCTGTGAGGCC
TTTGGCTGGCATGCCATCATCGTGGATGGGCACAGTGTGGAGGAGCTGTGCAAGGCCTTTGGTCAGGCCAAGCACCAACC
AACAGCCATCATTGCCAAGACCTTCAAGGGCCGCGGGATCACAGGGATTGAAGACAAGGAGGCGTGGCATGGGAAGCCCC
TCCCCAAAAACATGGCTGAGCAGATTATCCAGGAGATTTACAGCCAGGTTCAGAGCAAAAAGAAGATCCTCGCCACGCCC
CCTCAGGAGGATGCCCCTTCCGTGGACATTGCCAACATCCGAATGCCTACCCCACCCAACTACAAAGTGGGGGACAAGAT
AGCCACACGGAAAGCCTATGGATTGGCCCTTGCCAAGCTGGGCCACGCCAGTGACCGCATCATCGCCCTGGATGGAGACA
CCAAAAATTCCACCTTCTCAGAGCTCTTCAAAAAGGAGCACCCAGACCGTTTCATCGAGTGCTACATTGCTGAGCAGAAC
ATGGTGAGCATTGCTGTGGGCTGTGCCACACGTGACAGGACAGTGCCCTTCTGCAGCACTTTTGCGGCCTTCTTCACACG
CGCCTTCGACCAGATCCGCATGGCCGCCATCTCCGAGAGCAACATCAACCTCTGTGGCTCCCATTGCGGCGTGTCCATTG
GGGAAGACGGGCCCTCGCAGATGGCCCTGGAAGACCTGGCCATGTTTCGGTCGGTCCCTATGTCCACCGTCTTTTACCCA
AGTGATGGAGTTGCCACAGAGAAGGCAGTGGAATTAGCAGCCAATACAAAGGGCATCTGCTTCATTCGGACCAGCCGCCC
AGAAAATGCCATTATCTATAGCAACAACGAGGATTTCCAGGTTGGCCAAGCCAAGGTGGTCCTGAAGAGCAAGGACGACC
AAGTGACGGTGATCGGGGCTGGCGTAACTCTGCACGAGGCTCTGGCTGCTGCAGAGATGTTGAAGAAAGAGAAGATCGGC
GTCCGTGTACTGGACCCCTTCACCATCAAGCCCCTGGACAAAAAGCTCATTCTCGACTGTGCCAGAGCAACCAAAGGCAG
GATCCTCACCGTGGAGGACCACTACTATGAAGGTGGCATAGGCGAGGCAGTATCTGCTGCGGTAGTGGGCGAACCTGGAG
TCACAGTCACTCGCCTGGCGGTCAGCCAAGTACCACGAAGTGGGAAGCCAGCTGAGCTGCTGAAGATGTTTGGTATTGAC
AAAGACGCCATTGTGCAAGCTGTGAAGGGCCTTGTCACCAAGGGCTAG

Library Parental gene expression (RPM)
SRP017611_brain 126 .54 RPM
SRP017611_kidney 265 .03 RPM
SRP017611_liver 187 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003758 ortholog_one2many 1 retrogene
retro_btau_176,
Callithrix jacchus ENSCJAG00000007253 ortholog_one2many 1 retrogene
retro_cjac_2128,
Cavia porcellus ENSCPOG00000000072 ortholog_one2many 1 retrogene
retro_cpor_45,
Dipodomys ordii ENSDORG00000001392 ortholog_one2many 1 retrogene
retro_dord_329,
Homo sapiens ENSG00000163931 ortholog_one2many 1 retrogene
retro_hsap_47,
Macropus eugenii ENSMEUG00000005312 ortholog_one2many 3 retrogenes
retro_meug_1397, retro_meug_160, retro_meug_796,
Myotis lucifugus ENSMLUG00000000943 ortholog_one2many 1 retrogene
retro_mluc_67,
Macaca mulatta ENSMMUG00000014433 ortholog_one2many 1 retrogene
retro_mmul_74,
Mus musculus ENSMUSG00000021957 ortholog_one2many 1 retrogene
retro_mmus_220,
Oryctolagus cuniculus ENSOCUG00000015904 ortholog_one2many 2 retrogenes
retro_ocun_319, retro_ocun_62,
Otolemur garnettii ENSOGAG00000016911 ortholog_one2many 1 retrogene
retro_ogar_5,
Ochotona princeps ENSOPRG00000009891 ortholog_one2many 1 retrogene
retro_opri_10,
Pan troglodytes ENSPTRG00000015024 ortholog_one2many 1 retrogene
retro_ptro_126,
Pteropus vampyrus ENSPVAG00000016283 ortholog_one2many 1 retrogene
retro_pvam_352,
Sarcophilus harrisii ENSSHAG00000017349 ortholog_one2many 1 retrogene
retro_shar_827,
Sus scrofa ENSSSCG00000021408 ortholog_one2many 1 retrogene
retro_sscr_996,
Tupaia belangeri ENSTBEG00000012114 ortholog_one2many 1 retrogene
retro_tbel_3510,
Takifugu rubripes ENSTRUG00000003009 ortholog_many2many 1 retrogene
retro_trub_23,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_146 68.39 94.20
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Download FASTA sequences of all ENSRNOG00000016064 retrocopies