Parental gene:

Hspd1, ENSRNOG00000014525

Aliases:Hspd1, Hsp60, Hspd1-30p
Description:60 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P63039]
Organism:Rat (Rattus norvegicus)
Coordinates:9:61361745..61372172(-)


>ENSRNOG00000014525
ATGCTTCGACTACCCACAGTCCTTCGCCAGATGAGACCAGTGTCTCGGGCACTGGCTCCTCATCTCACTCGGGCCTATGC
CAAAGATGTAAAATTTGGTGCGGATGCTCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCCGATGCTGTAGCTGTTA
CAATGGGGCCAAAGGGAAGAACAGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGGGTCACTGTT
GCAAAGTCAATTGATTTAAAGGATAAATACAAAAATATCGGAGCTAAGCTTGTTCAGGATGTTGCCAATAACACAAATGA
AGAGGCTGGGGATGGCACCACCACTGCCACTGTTCTGGCACGGTCTATTGCCAAGGAGGGCTTTGAGAAGATCAGCAAAG
GGGCTAATCCAGTGGAAATCCGGAGAGGTGTGATGTTGGCTGTTGATGCTGTAATTGCTGAACTTAAGAAACAATCTAAA
CCTGTGACAACCCCTGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAACGGAGACAAAGACATTGGGAACATCATTTC
TGATGCAATGAAGAAGGTTGGAAGAAAGGGTGTCATCACAGTGAAGGATGGAAAAACCCTGAATGATGAGCTAGAAATTA
TTGAAGGCATGAAGTTTGATAGAGGATATATTTCCCCATATTTTATTAACACATCAAAAGGTCAAAAATGTGAATTCCAA
GATGCCTATGTTTTGTTGAGTGAAAAGAAAATTTCTAGTGTTCAGTCCATTGTACCTGCTCTTGAAATTGCCAATGCTCA
CCGGAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTCTTAGCACACTGGTTTTGAACAGGCTAAAAGTTG
GTCTTCAGGTTGTAGCAGTCAAAGCTCCAGGGTTTGGGGACAACAGGAAGAACCAGCTTAAAGATATGGCTATCGCTACT
GGTGGTGCGGTGTTTGGAGAAGAGGGTTTGAATCTAAATCTTGAAGATGTTCAAGCTCATGATTTAGGGAAAGTTGGAGA
GGTCATCGTCACCAAAGATGATGCCATGCTTTTGAAAGGAAAAGGTGACAAAGCTCACATTGAAAAACGTATTCAAGAAA
TCACTGAGCAGCTAGACATCACAACTAGTGAATATGAGAAGGAAAAGCTGAACGAGCGACTTGCTAAACTCTCAGATGGA
GTAGCTGTGTTGAAGGTTGGAGGGACAAGTGATGTTGAAGTGAATGAGAAGAAAGACAGAGTTACAGATGCTCTCAATGC
TACAAGAGCAGCTGTTGAAGAAGGCATTGTTCTAGGAGGGGGCTGTGCTCTACTTCGGTGCATCCCAGCCTTGGATTCAT
TAAAGCCTGCTAATGAAGATCAGAAGATAGGTATAGAAATTATTAAAAGAGCACTTAAAATTCCTGCAATGACAATTGCT
AAGAATGCAGGTGTTGAAGGATCTTTGATAGTTGAAAAAATTCTGCAGAGTTCCTCAGAGGTTGGCTATGATGCCATGCT
TGGAGATTTTGTGAACATGGTGGAAAAGGGAATCATTGATCCAACAAAGGTTGTAAGAACTGCTTTACTGGATGCTGCTG
GGGTGGCCTCCCTGCTAACTACAGCCGAAGCTGTAGTGACAGAAATTCCTAAAGAAGAGAAGGACCCTGGAATGGGTGCA
ATGGGTGGAATGGGAGGGGGTATGGGAGGTGGCATGTTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 100 .94 RPM
SRP017611_kidney 459 .10 RPM
SRP017611_liver 225 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013770 possible_ortholog 1 retrogene
retro_amel_771,
Bos taurus ENSBTAG00000012586 possible_ortholog 1 retrogene
retro_btau_988,
Canis familiaris ENSCAFG00000010865 possible_ortholog 4 retrogenes
retro_cfam_1185, retro_cfam_1620, retro_cfam_2165, retro_cfam_614,
Choloepus hoffmanni ENSCHOG00000007401 possible_ortholog 5 retrogenes
retro_chof_1105, retro_chof_1300, retro_chof_1822, retro_chof_2000, retro_chof_2397,
Callithrix jacchus ENSCJAG00000003990 ortholog_one2many 6 retrogenes
retro_cjac_1516, retro_cjac_1534, retro_cjac_1975, retro_cjac_3172, retro_cjac_3400, retro_cjac_4096,
Dasypus novemcinctus ENSDNOG00000013226 possible_ortholog 3 retrogenes
retro_dnov_1990, retro_dnov_2113, retro_dnov_2512,
Echinops telfairi ENSETEG00000009184 possible_ortholog 4 retrogenes
retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Homo sapiens ENSG00000144381 ortholog_one2many 7 retrogenes
retro_hsap_1006, retro_hsap_2770, retro_hsap_2987, retro_hsap_3151, retro_hsap_3494, retro_hsap_3930, retro_hsap_4018,
Gorilla gorilla ENSGGOG00000008267 ortholog_one2many 6 retrogenes
retro_ggor_1927, retro_ggor_2069, retro_ggor_2361, retro_ggor_2698, retro_ggor_800, retro_ggor_985,
Loxodonta africana ENSLAFG00000000053 possible_ortholog 1 retrogene
retro_lafr_476,
Macropus eugenii ENSMEUG00000011987 ortholog_one2many 2 retrogenes
retro_meug_1688, retro_meug_224,
Myotis lucifugus ENSMLUG00000000871 possible_ortholog 4 retrogenes
retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta ENSMMUG00000010489 ortholog_many2many 1 retrogene
retro_mmul_83,
Monodelphis domestica ENSMODG00000012289 ortholog_one2many 3 retrogenes
retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo ENSMPUG00000007818 possible_ortholog 3 retrogenes
retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Mus musculus ENSMUSG00000025980 ortholog_one2many 5 retrogenes
retro_mmus_1225, retro_mmus_2494, retro_mmus_3206, retro_mmus_439, retro_mmus_706,
Nomascus leucogenys ENSNLEG00000006874 ortholog_one2many 7 retrogenes
retro_nleu_1349, retro_nleu_2238, retro_nleu_229, retro_nleu_657, retro_nleu_675, retro_nleu_691, retro_nleu_787,
Otolemur garnettii ENSOGAG00000034053 possible_ortholog 5 retrogenes
retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Pongo abelii ENSPPYG00000013046 ortholog_one2many 5 retrogenes
retro_pabe_2040, retro_pabe_2244, retro_pabe_2476, retro_pabe_2887, retro_pabe_848,
Pteropus vampyrus ENSPVAG00000008306 possible_ortholog 1 retrogene
retro_pvam_250,
Ictidomys tridecemlineatus ENSSTOG00000028470 possible_ortholog 1 retrogene
retro_itri_224,
Tarsius syrichta ENSTSYG00000000513 possible_ortholog 6 retrogenes
retro_tsyr_1091, retro_tsyr_1181, retro_tsyr_1445, retro_tsyr_2082, retro_tsyr_395, retro_tsyr_804,
Tursiops truncatus ENSTTRG00000003417 possible_ortholog 3 retrogenes
retro_ttru_1661, retro_ttru_1798, retro_ttru_951,
Xenopus tropicalis ENSXETG00000007509 ortholog_one2many 1 retrogene
retro_xtro_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_596 85.80 57.42
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2. retro_rnor_905 85.81 99.30
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3. retro_rnor_1000 91.21 100.00
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4. retro_rnor_1006 90.69 100.00
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5. retro_rnor_1308 92.23 64.75
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6. retro_rnor_1578 90.69 50.44
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7. retro_rnor_1585 85.46 96.16
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8. retro_rnor_2812 73.09 51.83
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9. retro_rnor_2835 81.51 50.61
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Download FASTA sequences of all ENSRNOG00000014525 retrocopies