Parental gene:

HSPD1, ENSTSYG00000000513

Aliases:None
Description:heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261]
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_4469:2370..12470(-)


>ENSTSYG00000000513
ATGCTCCGATTACCCGCAGTCCTTCGCCAGATGAGACCGGTGTCCCGAGCCCTGGCTCCCCATCTCACTCGGGCCTATGC
CAAAGATGTAAAATTTGGTGCAGATGCCCGAGCCTTAATGCTGCAAGGTGTAGACCTTTTAGCCGACGCTGTAGCAGTTA
CAATGGGGCCAAAGGGAAGAACAGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACTGTT
GCAAAGTCAATTGACTTAAAGGATAAATATAAAAACATTGGAGCTAAACTTGTTCAGGATGTTGCCAATAACACAAATGA
AGAGGCGGGGGATGGCACCACCACTGCTACTGTGCTGGCACGCTCTATTGCCAAGGAAGGCTTTGAGAAGATCAGCAAAG
GCGCTAATCCAGTAGAAATCAGGAGAGGTGTAATGTTAGCTGTTGATGCTGTCATTGTGGAACTTAAGAAGCAGTCCAAA
CCTGTGACAACCCCGGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGATAAAGAAATTGGCAGCATCATTTC
TGATGCTATGAAAAAGGTCGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACGCTAAATGATGAATTAGAAATTA
TTGAAGGCATGAAGTTTGATCGAGGTTATATTTCTCCATACTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCTTATGTTCTATTGAGTGAAAAGAAAATTTCTAGTGTCCAGTCTATTGTACCTGCTCTTGAAATTGCCAATGCTCA
CCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTCTCAGTACACTCGTTTTGAATAGGCTAAAAGTTG
GTCTTCAGGTTGTAGCAGTCAAAGCTCCAGGTTTTGGTGATAATAGGAAAAACCAGCTTAAAGATATGGCTATTGCTACT
GGTGGTGCAGTGTTTGGTGAAGAGGGGCTGACCTTAAATCTTGAAGATATTCAGCCTCATGACTTAGGAAAAGTTGGAGA
GGTCATTGTAACCAAAGATGATGCTATGCTCTTGAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTCAAGAAA
TCATTGAGCAGTTGGATGTCACAACTAGTGAATATGAGAAGGAAAAACTGAATGAACGTCTGGCAAAACTCTCAGATGGA
GTAGCTGTGCTAAAGGTTGGTGGGACAAGTGATGTTGAAGTGAACGAGGAAGACAGGGTTACAGATGCCCTTAATGCT

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013770 possible_ortholog 1 retrogene
retro_amel_771,
Canis familiaris ENSCAFG00000010865 possible_ortholog 4 retrogenes
retro_cfam_1185, retro_cfam_1620, retro_cfam_2165, retro_cfam_614,
Choloepus hoffmanni ENSCHOG00000007401 ortholog_one2one 5 retrogenes
retro_chof_1105, retro_chof_1300, retro_chof_1822, retro_chof_2000, retro_chof_2397,
Callithrix jacchus ENSCJAG00000003990 possible_ortholog 6 retrogenes
retro_cjac_1516, retro_cjac_1534, retro_cjac_1975, retro_cjac_3172, retro_cjac_3400, retro_cjac_4096,
Echinops telfairi ENSETEG00000009184 possible_ortholog 4 retrogenes
retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Loxodonta africana ENSLAFG00000000053 possible_ortholog 1 retrogene
retro_lafr_476,
Macropus eugenii ENSMEUG00000011987 ortholog_one2one 2 retrogenes
retro_meug_1688, retro_meug_224,
Myotis lucifugus ENSMLUG00000000871 ortholog_one2many 4 retrogenes
retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta ENSMMUG00000010489 possible_ortholog 1 retrogene
retro_mmul_83,
Monodelphis domestica ENSMODG00000012289 ortholog_one2one 3 retrogenes
retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo ENSMPUG00000007818 possible_ortholog 3 retrogenes
retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Otolemur garnettii ENSOGAG00000034053 possible_ortholog 5 retrogenes
retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Pteropus vampyrus ENSPVAG00000008306 ortholog_one2one 1 retrogene
retro_pvam_250,
Rattus norvegicus ENSRNOG00000014525 possible_ortholog 9 retrogenes
retro_rnor_1000, retro_rnor_1006, retro_rnor_1308, retro_rnor_1578, retro_rnor_1585, retro_rnor_2812, retro_rnor_2835, retro_rnor_596, retro_rnor_905,
Ictidomys tridecemlineatus ENSSTOG00000028470 ortholog_one2one 1 retrogene
retro_itri_224,
Xenopus tropicalis ENSXETG00000007509 ortholog_one2one 1 retrogene
retro_xtro_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_395 71.33 66.43
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2. retro_tsyr_804 86.32 81.92
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3. retro_tsyr_1091 93.47 100.00
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4. retro_tsyr_1181 70.98 66.43
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5. retro_tsyr_1445 71.88 58.92
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6. retro_tsyr_2082 71.33 66.43
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Download FASTA sequences of all ENSTSYG00000000513 retrocopies