Common name: Xenopus
Latin name: Xenopus tropicalis
Genome assembly: JGI_4.2
All retrocopies: 69
Parental genes: 63

Summary: Number of retrocopies :
Conserved ORF: 60 ORF 9 ORF
Expressed retrocopies (RNA-Seq): 15 RNA-Seq 54 RNA-Seq

# RetrogeneDB ID Identity Coverage ORF conservation Expression evidence
1. retro_xtro_1 50.41 % 63.02 % ORF RNA-Seq
2. retro_xtro_2 56.87 % 51.49 % ORF RNA-Seq
3. retro_xtro_3 96.35 % 100.00 % ORF RNA-Seq
4. retro_xtro_4 84.38 % 100.00 % ORF RNA-Seq
5. retro_xtro_5 97.44 % 84.17 % ORF RNA-Seq
6. retro_xtro_6 55.86 % 97.87 % ORF RNA-Seq
7. retro_xtro_7 54.14 % 73.65 % ORF RNA-Seq
8. retro_xtro_8 52.19 % 65.53 % ORF RNA-Seq
9. retro_xtro_9 50.77 % 98.11 % ORF RNA-Seq
10. retro_xtro_10 50.52 % 86.94 % ORF RNA-Seq
11. retro_xtro_11 53.44 % 79.37 % ORF RNA-Seq
12. retro_xtro_12 70.14 % 95.58 % ORF RNA-Seq
13. retro_xtro_13 53.64 % 91.14 % ORF RNA-Seq
14. retro_xtro_14 86.88 % 100.00 % ORF RNA-Seq
15. retro_xtro_15 86.32 % 98.45 % ORF RNA-Seq
16. retro_xtro_16 59.02 % 53.98 % ORF RNA-Seq
17. retro_xtro_17 73.14 % 74.03 % ORF RNA-Seq
18. retro_xtro_18 74.39 % 75.23 % ORF RNA-Seq
19. retro_xtro_19 80.77 % 77.25 % ORF RNA-Seq
20. retro_xtro_20 97.01 % 70.90 % ORF RNA-Seq
21. retro_xtro_22 56.97 % 60.66 % ORF RNA-Seq
22. retro_xtro_23 69.78 % 66.25 % ORF RNA-Seq
23. retro_xtro_24 99.73 % 100.00 % ORF RNA-Seq
24. retro_xtro_25 62.30 % 60.51 % ORF RNA-Seq
25. retro_xtro_26 57.80 % 51.81 % ORF RNA-Seq
26. retro_xtro_28 78.17 % 97.00 % ORF RNA-Seq
27. retro_xtro_29 66.05 % 94.01 % ORF RNA-Seq
28. retro_xtro_30 74.44 % 99.25 % ORF RNA-Seq
29. retro_xtro_31 59.95 % 50.53 % ORF RNA-Seq
30. retro_xtro_32 50.50 % 84.23 % ORF RNA-Seq
31. retro_xtro_33 59.71 % 85.04 % ORF RNA-Seq
32. retro_xtro_34 54.03 % 55.98 % ORF RNA-Seq
33. retro_xtro_35 51.90 % 94.31 % ORF RNA-Seq
34. retro_xtro_36 55.69 % 91.20 % ORF RNA-Seq
35. retro_xtro_37 51.90 % 94.31 % ORF RNA-Seq
36. retro_xtro_38 50.43 % 52.31 % ORF RNA-Seq
37. retro_xtro_39 59.72 % 82.76 % ORF RNA-Seq
38. retro_xtro_40 52.94 % 59.45 % ORF RNA-Seq
39. retro_xtro_41 54.57 % 74.62 % ORF RNA-Seq
40. retro_xtro_42 61.88 % 90.45 % ORF RNA-Seq
41. retro_xtro_43 64.33 % 69.93 % ORF RNA-Seq
42. retro_xtro_44 54.19 % 97.07 % ORF RNA-Seq
43. retro_xtro_45 54.96 % 98.24 % ORF RNA-Seq
44. retro_xtro_46 56.43 % 53.08 % ORF RNA-Seq
45. retro_xtro_47 62.15 % 92.67 % ORF RNA-Seq
46. retro_xtro_48 79.10 % 61.29 % ORF RNA-Seq
47. retro_xtro_49 50.32 % 66.95 % ORF RNA-Seq
48. retro_xtro_50 59.63 % 77.03 % ORF RNA-Seq
49. retro_xtro_51 65.97 % 92.93 % ORF RNA-Seq
50. retro_xtro_52 55.48 % 92.62 % ORF RNA-Seq
51. retro_xtro_53 56.91 % 70.68 % ORF RNA-Seq
52. retro_xtro_54 61.81 % 100.00 % ORF RNA-Seq
53. retro_xtro_55 59.00 % 58.74 % ORF RNA-Seq
54. retro_xtro_56 57.30 % 89.10 % ORF RNA-Seq
55. retro_xtro_57 63.96 % 98.14 % ORF RNA-Seq
56. retro_xtro_58 54.01 % 50.71 % ORF RNA-Seq
57. retro_xtro_59 64.42 % 78.30 % ORF RNA-Seq
58. retro_xtro_60 57.61 % 64.79 % ORF RNA-Seq
59. retro_xtro_61 55.23 % 61.65 % ORF RNA-Seq
60. retro_xtro_62 65.19 % 67.44 % ORF RNA-Seq
61. retro_xtro_63 53.14 % 93.92 % ORF RNA-Seq
62. retro_xtro_64 84.32 % 61.79 % ORF RNA-Seq
63. retro_xtro_65 56.31 % 92.22 % ORF RNA-Seq
64. retro_xtro_66 72.80 % 78.48 % ORF RNA-Seq
65. retro_xtro_67 54.98 % 98.77 % ORF RNA-Seq
66. retro_xtro_68 68.74 % 86.59 % ORF RNA-Seq
67. retro_xtro_69 51.76 % 79.94 % ORF RNA-Seq
68. retro_xtro_70 62.98 % 77.54 % ORF RNA-Seq
69. retro_xtro_71 64.21 % 98.90 % ORF RNA-Seq
# Ensembl ID Symbol Description
1. ENSXETG00000003158 enosf1 enolase superfamily member 1 [Source:Jamboree;Acc:XB-GENE-940740]
2. ENSXETG00000025999 agmat agmatine ureohydrolase (agmatinase) [Source:Jamboree;Acc:XB-GENE-997016]
3. ENSXETG00000033956
4. ENSXETG00000030588
5. ENSXETG00000021320 bdh2 3-hydroxybutyrate dehydrogenase, type 2 [Source:Jamboree;Acc:XB-GENE-985755]
6. ENSXETG00000003702 ndufs7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase) [Source:Jamboree;Acc:XB-GENE-1008982]
7. ENSXETG00000006898 rhoc ras homolog gene family, member C [Source:Jamboree;Acc:XB-GENE-941426]
8. ENSXETG00000008793 sri sorcin [Source:Jamboree;Acc:XB-GENE-952117]
9. ENSXETG00000019486 ahcy adenosylhomocysteinase [Source:Jamboree;Acc:XB-GENE-950017]
10. ENSXETG00000018213 mccc2 methylcrotonoyl-CoA carboxylase 2 (beta) [Source:Jamboree;Acc:XB-GENE-985830]
11. ENSXETG00000007430 nfs1 NFS1 nitrogen fixation 1 homolog [Source:Jamboree;Acc:XB-GENE-1010917]
12. ENSXETG00000033975 GAPDH glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001004949]
13. ENSXETG00000003981 cat.2 catalase, gene 2 [Source:Jamboree;Acc:XB-GENE-976955]
14. ENSXETG00000011079 gstz1 glutathione transferase zeta 1 [Source:Jamboree;Acc:XB-GENE-978910]
15. ENSXETG00000019489 etfdh electron-transferring-flavoprotein dehydrogenase [Source:Jamboree;Acc:XB-GENE-972267]
16. ENSXETG00000022535 gnpat glyceronephosphate O-acyltransferase [Source:Jamboree;Acc:XB-GENE-948374]
17. ENSXETG00000027593 rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:Jamboree;Acc:XB-GENE-489008]
18. ENSXETG00000014749 mrpl10 mitochondrial ribosomal protein L10 [Source:Jamboree;Acc:XB-GENE-947066]
19. ENSXETG00000025116 actb actin, beta [Source:Jamboree;Acc:XB-GENE-490883]
20. ENSXETG00000031345
21. ENSXETG00000032448
22. ENSXETG00000021417 acta1 actin, alpha 1, skeletal muscle [Source:Jamboree;Acc:XB-GENE-491938]
23. ENSXETG00000024665 atp5b ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide [Source:Jamboree;Acc:XB-GENE-943110]
24. ENSXETG00000032112 FH fumarate hydratase [Source:HGNC Symbol;Acc:3700]
25. ENSXETG00000022002 gtf2a2 general transcription factor IIA, 2, 12kDa [Source:RefSeq peptide;Acc:NP_001005107]
26. ENSXETG00000021095 rpl34 ribosomal protein L34 [Source:Jamboree;Acc:XB-GENE-957318]
27. ENSXETG00000001671 taldo1 transaldolase 1 [Source:Jamboree;Acc:XB-GENE-1005380]
28. ENSXETG00000020930 aldh2 aldehyde dehydrogenase 2 family (mitochondrial) [Source:Jamboree;Acc:XB-GENE-490836]
29. ENSXETG00000011272 bmp7.1 bone morphogenetic protein 7, gene 1 [Source:Jamboree;Acc:XB-GENE-486014]
30. ENSXETG00000032776 dse dermatan sulfate epimerase precursor [Source:RefSeq peptide;Acc:NP_001120268]
31. ENSXETG00000033657
32. ENSXETG00000014129 nubpl nucleotide binding protein-like [Source:Jamboree;Acc:XB-GENE-971259]
33. ENSXETG00000015322 etfa electron-transfer-flavoprotein, alpha polypeptide [Source:Jamboree;Acc:XB-GENE-943222]
34. ENSXETG00000022222 etfb electron-transfer-flavoprotein, beta polypeptide [Source:Jamboree;Acc:XB-GENE-956098]
35. ENSXETG00000009304 adh5 alcohol dehydrogenase 5 (class III), chi polypeptide [Source:Jamboree;Acc:XB-GENE-977214]
36. ENSXETG00000007381 XB-GENE-5895314 hypothetical protein LOC100136946 [Source:Jamboree;Acc:XB-GENE-5895314]
37. ENSXETG00000005576 clpp ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog [Source:Jamboree;Acc:XB-GENE-969408]
38. ENSXETG00000013264 dlst dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) [Source:Jamboree;Acc:XB-GENE-1016310]
39. ENSXETG00000001085 acadl acyl-CoA dehydrogenase, long chain [Source:Jamboree;Acc:XB-GENE-958719]
40. ENSXETG00000003396 ndufv1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa [Source:Jamboree;Acc:XB-GENE-495063]
41. ENSXETG00000020882 ndufs8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Source:Jamboree;Acc:XB-GENE-945877]
42. ENSXETG00000015599 c7orf10 chromosome 7 open reading frame 10 [Source:Jamboree;Acc:XB-GENE-5750708]
43. ENSXETG00000013435 sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:Jamboree;Acc:XB-GENE-970193]
44. ENSXETG00000016078 ivd isovaleryl-CoA dehydrogenase [Source:Jamboree;Acc:XB-GENE-1008677]
45. ENSXETG00000024377 XB-GENE-5822524 zinc finger protein [Source:Jamboree;Acc:XB-GENE-5822524]
46. ENSXETG00000009388 fbxw7 F-box and WD repeat domain containing 7 [Source:Jamboree;Acc:XB-GENE-1000486]
47. ENSXETG00000021961 aldh5a1 aldehyde dehydrogenase 5 family, member A1 [Source:Jamboree;Acc:XB-GENE-1013005]
48. ENSXETG00000013304 aldh6a1 aldehyde dehydrogenase 6 family, member A1 [Source:Jamboree;Acc:XB-GENE-1006692]
49. ENSXETG00000024706
50. ENSXETG00000007721 hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 [Source:Jamboree;Acc:XB-GENE-986902]
51. ENSXETG00000026344
52. ENSXETG00000025303 cyp1b1 cytochrome P450, family 1, subfamily B, polypeptide 1 [Source:Jamboree;Acc:XB-GENE-951460]
53. ENSXETG00000023408 sdha succinate dehydrogenase complex, subunit A, flavoprotein (Fp) [Source:Jamboree;Acc:XB-GENE-956942]
54. ENSXETG00000001806 hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 [Source:Jamboree;Acc:XB-GENE-5878765]
55. ENSXETG00000021174 acat2 acetyl-CoA acetyltransferase 2 [Source:Jamboree;Acc:XB-GENE-5929870]
56. ENSXETG00000018331 dck.2 deoxycytidine kinase, gene 2 [Source:Jamboree;Acc:XB-GENE-5727742]
57. ENSXETG00000027428 iscu iron-sulfur cluster scaffold homolog [Source:Jamboree;Acc:XB-GENE-946406]
58. ENSXETG00000018981 ppia peptidylprolyl isomerase A (cyclophilin A) [Source:Jamboree;Acc:XB-GENE-5778000]
59. ENSXETG00000007509 hspd1 heat shock 60kDa protein 1 (chaperonin) [Source:Jamboree;Acc:XB-GENE-980059]
60. ENSXETG00000032691
61. ENSXETG00000022018 rpl14 ribosomal protein L14 [Source:Jamboree;Acc:XB-GENE-5819035]
62. ENSXETG00000015336 hmgcl 3-hydroxymethyl-3-methylglutaryl-CoA lyase [Source:Jamboree;Acc:XB-GENE-1002069]
63. ENSXETG00000007932 gcdh glutaryl-CoA dehydrogenase [Source:Jamboree;Acc:XB-GENE-1016447]
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)