Parental gene:

rac1, ENSXETG00000027593

Aliases:None
Description:ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:Jamboree;Acc:XB-GENE-489008]
Organism:Xenopus (Xenopus tropicalis)
Coordinates:GL172650.1:2525755..2540697(-)


>ENSXETG00000027593
ATGCAGGCCATTAAATGTGTGGTCGTGGGAGACGGGGCTGTAGGTAAAACATGTTTGCTGATCAGTTACACTACCAATGC
TTTTCCTGGGGAATATATCCCAACTGTTTTCGACAACTATTCTGCCAATGTTATGGTGGATGGAAAACCAGTTAATTTGG
GGTTATGGGATACAGCCGGACAGGAGGACTACGACAGATTACGTCCATTGTCTTACCCTCAAACGGATGTGTTCTTAATT
TGCTTTTCACTGGTTAGCCCAGCCTCATTCGAAAATGTTCGTGCTAAGTGGTACCCAGAAGTGCGACACCATTGTCCCAA
CACTCCCATTATCCTTGTGGGCACCAAACTTGATCTGAGAGATGATAAAGACACTATTGAGAAGCTGAAAGAAAAGAAGC
TCACACCAATTACCTACCCTCAGGGACTCGCCATGGCTAAAGAGATTGGTGCTGTAAAATACTTGGAATGCTCTGCCCTT
ACGCAGCGAGGGTTGAAGACTGTGTTTGACGAAGCAATCCGAGCAGTGCTGTGCCCACCTCCAGTCAAGAAGCGAAAGAG
AAAATGCCTGCTGTTGTAA

Library Parental gene expression (RPM)
SRP007412_brain 490 .11 RPM
SRP007412_heart 145 .33 RPM
SRP007412_kidney 145 .33 RPM
SRP007412_liver 72 .67 RPM
SRP007412_skeletal_muscle 63 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009233 ortholog_one2one 2 retrogenes
retro_btau_1601, retro_btau_332,
Canis familiaris ENSCAFG00000015716 ortholog_one2one 1 retrogene
retro_cfam_496,
Felis catus ENSFCAG00000011361 ortholog_one2one 2 retrogenes
retro_fcat_1632, retro_fcat_717,
Homo sapiens ENSG00000136238 ortholog_one2one 6 retrogenes
retro_hsap_1256, retro_hsap_1925, retro_hsap_28, retro_hsap_3036, retro_hsap_3072, retro_hsap_4910,
Gorilla gorilla ENSGGOG00000026733 ortholog_one2many 2 retrogenes
retro_ggor_2110, retro_ggor_217,
Loxodonta africana ENSLAFG00000012844 ortholog_one2one 1 retrogene
retro_lafr_818,
Myotis lucifugus ENSMLUG00000009701 ortholog_one2one 1 retrogene
retro_mluc_1059,
Macaca mulatta ENSMMUG00000021075 ortholog_one2one 4 retrogenes
retro_mmul_1310, retro_mmul_1964, retro_mmul_2642, retro_mmul_721,
Mus musculus ENSMUSG00000001847 ortholog_one2one 2 retrogenes
retro_mmus_1372, retro_mmus_234,
Oryctolagus cuniculus ENSOCUG00000009956 ortholog_one2one 1 retrogene
retro_ocun_305,
Pan troglodytes ENSPTRG00000018910 ortholog_one2many 4 retrogenes
retro_ptro_1288, retro_ptro_3044, retro_ptro_3274, retro_ptro_36,
Rattus norvegicus ENSRNOG00000001068 ortholog_one2one 1 retrogene
retro_rnor_230,
Ictidomys tridecemlineatus ENSSTOG00000006784 ortholog_one2one 1 retrogene
retro_itri_1503,
Tupaia belangeri ENSTBEG00000007272 possible_ortholog 4 retrogenes
retro_tbel_1796, retro_tbel_2564, retro_tbel_4296, retro_tbel_9,
Tarsius syrichta ENSTSYG00000001618 ortholog_one2one 2 retrogenes
retro_tsyr_2027, retro_tsyr_2068,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_xtro_1 50.41 63.02
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Download FASTA sequences of all ENSXETG00000027593 retrocopies