Parental gene:

iscu, ENSXETG00000027428

Aliases:None
Description:iron-sulfur cluster scaffold homolog [Source:Jamboree;Acc:XB-GENE-946406]
Organism:Xenopus (Xenopus tropicalis)
Coordinates:GL173091.1:957704..965144(+)


>ENSXETG00000027428
ATGGCTGGCGTGGGCCGGGTGTTTTGCTCCTTATGGAGAAAATGTGGGGTGCACGAGTTTCGGGTGCCTTGTGCTTCTTA
TCATAAGAAGGTAGTTGATCATTATGAAAATCCAAGAAATGTTGGATCCCTTGACAAGAACGCAAAGAATGTTGGGACTG
GGTTGGTGGGAGCACCAGCATGTGGTGATGTCATGAAACTACAGATTGAAGTGGACAACAATGGAAAGATTATTGAAGCC
AAGTTCAAAACGTTTGGTTGTGGGTCTGCCATTGCCTCCAGTTCTCTTGCCACAGAATGGGTTAAGGGAAAAACGGTTGA
TGAAGCTATGACTATCAAGAATACAGACATAGCCAAAGAACTCTGCCTTCCACCAGTGAAGCTGCACTGTTCCATGCTGG
CTGAAGATGCCATCAGAGCAGCCCTGGCAGATTACAGACTGAAGCAGGATAAAGACGAAGCTGCAGCAAGTGGCTAG

Library Parental gene expression (RPM)
SRP007412_brain 117 .42 RPM
SRP007412_heart 289 .08 RPM
SRP007412_kidney 289 .08 RPM
SRP007412_liver 80 .25 RPM
SRP007412_skeletal_muscle 226 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016405 ortholog_one2one 3 retrogenes
retro_amel_1338, retro_amel_755, retro_amel_902,
Bos taurus ENSBTAG00000011787 ortholog_one2one 3 retrogenes
retro_btau_378, retro_btau_646, retro_btau_648,
Canis familiaris ENSCAFG00000011324 ortholog_one2one 4 retrogenes
retro_cfam_388, retro_cfam_390, retro_cfam_599, retro_cfam_686,
Choloepus hoffmanni ENSCHOG00000011773 ortholog_one2one 2 retrogenes
retro_chof_229, retro_chof_2698,
Callithrix jacchus ENSCJAG00000015374 ortholog_one2many 2 retrogenes
retro_cjac_1584, retro_cjac_1644,
Cavia porcellus ENSCPOG00000010986 ortholog_one2one 1 retrogene
retro_cpor_1201,
Equus caballus ENSECAG00000019879 ortholog_one2one 3 retrogenes
retro_ecab_359, retro_ecab_753, retro_ecab_849,
Felis catus ENSFCAG00000014044 ortholog_one2one 2 retrogenes
retro_fcat_1769, retro_fcat_471,
Homo sapiens ENSG00000136003 ortholog_one2one 2 retrogenes
retro_hsap_3596, retro_hsap_468,
Gorilla gorilla ENSGGOG00000011579 ortholog_one2one 2 retrogenes
retro_ggor_2426, retro_ggor_446,
Loxodonta africana ENSLAFG00000007170 ortholog_one2one 2 retrogenes
retro_lafr_609, retro_lafr_728,
Microcebus murinus ENSMICG00000013067 ortholog_one2one 4 retrogenes
retro_mmur_1359, retro_mmur_558, retro_mmur_636, retro_mmur_81,
Myotis lucifugus ENSMLUG00000007942 ortholog_one2one 3 retrogenes
retro_mluc_1106, retro_mluc_1939, retro_mluc_2342,
Macaca mulatta ENSMMUG00000017126 ortholog_one2one 1 retrogene
retro_mmul_572,
Monodelphis domestica ENSMODG00000002828 ortholog_one2many 1 retrogene
retro_mdom_1924,
Mus musculus ENSMUSG00000025825 ortholog_one2one 2 retrogenes
retro_mmus_1806, retro_mmus_3317,
Nomascus leucogenys ENSNLEG00000006797 ortholog_one2one 2 retrogenes
retro_nleu_299, retro_nleu_884,
Oryctolagus cuniculus ENSOCUG00000016305 ortholog_one2one 1 retrogene
retro_ocun_637,
Otolemur garnettii ENSOGAG00000000936 ortholog_one2one 4 retrogenes
retro_ogar_1082, retro_ogar_1802, retro_ogar_425, retro_ogar_847,
Procavia capensis ENSPCAG00000007604 ortholog_one2one 2 retrogenes
retro_pcap_257, retro_pcap_86,
Pongo abelii ENSPPYG00000004920 ortholog_one2one 3 retrogenes
retro_pabe_1753, retro_pabe_266, retro_pabe_2956,
Sorex araneus ENSSARG00000012942 ortholog_one2one 1 retrogene
retro_sara_322,
Tupaia belangeri ENSTBEG00000001086 ortholog_one2one 3 retrogenes
retro_tbel_1987, retro_tbel_2588, retro_tbel_545,
Tarsius syrichta ENSTSYG00000013952 ortholog_one2one 2 retrogenes
retro_tsyr_1484, retro_tsyr_98,
Tursiops truncatus ENSTTRG00000004036 ortholog_one2one 1 retrogene
retro_ttru_1720,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_xtro_66 72.80 78.48
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Download FASTA sequences of all ENSXETG00000027428 retrocopies