RetrogeneDB - Parental gene ENSCAFG00000010865 details

                            
>ENSCAFG00000010865
ATGCTTCGATTACCCGCAGTGCTCCGCCACGTCAGGCCAGTGTCCAGAGCCCTGGCTCCTCATCTCACTCGGGCCTATGC

CAAGGATGTAAAATTCGGTGCCGATGCCCGAGCCTTAATGCTTCAAGGTGTAGATCTCCTAGCCGATGCCGTAGCCGTTA

CTATGGGGCCAAAGGGAAGAACAGTGATTATTGAGCAGAGTTGGGGAAGTCCCAAAGTAACAAAGGATGGTGTGACCGTG

GCAAAGTCAATTGACTTAAAAGACAAATATAAAAATATTGGCGCTAAACTTGTTCAAGATGTTGCCAATAACACAAACGA

AGAGGCTGGGGATGGCACCACTACTGCTACTGTCTTGGCACGCTCTATTGCCAAGGAAGGCTTCGAGAAGATTAGCAAAG

GTGCTAATCCTGTGGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAA

CCCGTGACAACCCCTGAAGAAATTGCACAGGTTGCTACGATTTCTGCGAATGGAGACAAAGAAATTGGCAACATCATTTC

TGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACACTGAATGATGAATTGGAAATTA

TTGAAGGCATGAAGTTTGATCGAGGCTATATTTCTCCATACTTTATTAATACGTCGAAAGGTCAGAAATGTGAATTCCAA

GATGCCTATGTTCTATTGAGTGAAAAGAAGATTTCTAGTGTCCAGTCCATTGTACCTGCTCTTGAAATTGCCAATGCTCA

CCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTCTGAGTACACTTGTTTTAAATAGGCTAAAAGTCG

GTCTTCAGGTTGTGGCAGTCAAAGCTCCAGGTTTTGGTGACAATAGAAAGAACCAGCTTAAAGATATGGCTATTGCTACT

GGTGGTGCAGTGTTTGGGGAAGAAGGGTTGACTCTAAATCTCGAAGATGTTCAGCCTCATGACTTAGGAAAAGTTGGAGA

GGTCATTGTGACCAAAGATGATGCCATGCTTTTAAAAGGAAAAGGTGACAAGGCTCAAATTGAAAAACGTATTCAAGAAA

TCATTGAGCAGTTAGATATCACAACTAGTGAATACGAAAAGGAAAAGCTGAATGAGCGTCTGGCAAAACTCTCAGATGGA

GTAGCTGTGTTGAAGGTTGGTGGGACAAGTGATGTTGAAGTGAATGAAAAGAAAGACCGAGTTACAGATGCCCTCAATGC

CACAAGAGCTGCTGTTGAAGAAGGCATTGTTCTGGGAGGAGGTTGTGCCCTGCTTCGGTGCATTCCAGCCTTGGATTCAA

TAACTCCAGCTAATGAAGATCAAAGAATTGGTATCGAAATTATTAAGAGAACACTCAAAATTCCTGCAATGACCATTGCT

AAGAATGCAGGTGTTGAAGGATCATTGATAGTTGAGAAAATTATGCAGAGTTCCTCAGAAGTTGGTTATGATGCTATGCT

TGGAGATTTTGTGAATATGGTGGAAAAAGGAATCATTGATCCAACTAAGGTGGTAAGAACTGCTTTATTGGATGCTGCTG

GAGTGGCCTCTCTGTTAACCACGGCAGAAGTTGTAGTCACCGAAATTCCTAAAGAAGAGAAGGACCCAGGAATGGGTGGA

ATGGGTGGAATGGGAGGTGGTATGGGAGGCGGCATGTTCTGA

Library	Parental gene expression (RPM)
SRP012049_cerebellum	143 .76 RPM
SRP017611_brain	134 .33 RPM
SRP017611_kidney	641 .35 RPM
SRP017611_liver	336 .10 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000013770	ortholog_one2one	1 retrogene	retro_amel_771,
Bos taurus	ENSBTAG00000012586	ortholog_one2one	1 retrogene	retro_btau_988,
Choloepus hoffmanni	ENSCHOG00000007401	possible_ortholog	5 retrogenes	retro_chof_1105, retro_chof_1300, retro_chof_1822, retro_chof_2000, retro_chof_2397,
Callithrix jacchus	ENSCJAG00000003990	possible_ortholog	6 retrogenes	retro_cjac_1516, retro_cjac_1534, retro_cjac_1975, retro_cjac_3172, retro_cjac_3400, retro_cjac_4096,
Dasypus novemcinctus	ENSDNOG00000013226	ortholog_one2one	3 retrogenes	retro_dnov_1990, retro_dnov_2113, retro_dnov_2512,
Echinops telfairi	ENSETEG00000009184	possible_ortholog	4 retrogenes	retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Homo sapiens	ENSG00000144381	possible_ortholog	7 retrogenes	retro_hsap_1006, retro_hsap_2770, retro_hsap_2987, retro_hsap_3151, retro_hsap_3494, retro_hsap_3930, retro_hsap_4018,
Gorilla gorilla	ENSGGOG00000008267	possible_ortholog	6 retrogenes	retro_ggor_1927, retro_ggor_2069, retro_ggor_2361, retro_ggor_2698, retro_ggor_800, retro_ggor_985,
Loxodonta africana	ENSLAFG00000000053	ortholog_one2one	1 retrogene	retro_lafr_476,
Macropus eugenii	ENSMEUG00000011987	ortholog_one2many	2 retrogenes	retro_meug_1688, retro_meug_224,
Myotis lucifugus	ENSMLUG00000000871	possible_ortholog	4 retrogenes	retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta	ENSMMUG00000010489	possible_ortholog	1 retrogene	retro_mmul_83,
Monodelphis domestica	ENSMODG00000012289	ortholog_one2many	3 retrogenes	retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo	ENSMPUG00000007818	ortholog_one2one	3 retrogenes	retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Mus musculus	ENSMUSG00000025980	possible_ortholog	5 retrogenes	retro_mmus_1225, retro_mmus_2494, retro_mmus_3206, retro_mmus_439, retro_mmus_706,
Nomascus leucogenys	ENSNLEG00000006874	possible_ortholog	7 retrogenes	retro_nleu_1349, retro_nleu_2238, retro_nleu_229, retro_nleu_657, retro_nleu_675, retro_nleu_691, retro_nleu_787,
Otolemur garnettii	ENSOGAG00000034053	possible_ortholog	5 retrogenes	retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Pongo abelii	ENSPPYG00000013046	possible_ortholog	5 retrogenes	retro_pabe_2040, retro_pabe_2244, retro_pabe_2476, retro_pabe_2887, retro_pabe_848,
Pteropus vampyrus	ENSPVAG00000008306	possible_ortholog	1 retrogene	retro_pvam_250,
Rattus norvegicus	ENSRNOG00000014525	possible_ortholog	9 retrogenes	retro_rnor_1000, retro_rnor_1006, retro_rnor_1308, retro_rnor_1578, retro_rnor_1585, retro_rnor_2812, retro_rnor_2835, retro_rnor_596, retro_rnor_905,
Ictidomys tridecemlineatus	ENSSTOG00000028470	possible_ortholog	1 retrogene	retro_itri_224,
Tarsius syrichta	ENSTSYG00000000513	possible_ortholog	6 retrogenes	retro_tsyr_1091, retro_tsyr_1181, retro_tsyr_1445, retro_tsyr_2082, retro_tsyr_395, retro_tsyr_804,
Tursiops truncatus	ENSTTRG00000003417	ortholog_one2one	3 retrogenes	retro_ttru_1661, retro_ttru_1798, retro_ttru_951,
Xenopus tropicalis	ENSXETG00000007509	ortholog_one2many	1 retrogene	retro_xtro_63,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_614	75.17	50.09	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_1185	86.42	52.18	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_1620	88.77	83.42	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_2165	86.56	73.12	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000010865 retrocopies

Parental gene:	ENSCAFG00000010865
Aliases:	None
Description:	60 kDa heat shock protein, mitochondrial [Source:UniProtKB/TrEMBL;Acc:E2QUU5]
Organism:	*Dog (Canis familiaris)*
Coordinates:	37:7010894..7020336(-)

Parental gene:

ENSCAFG00000010865