Parental gene:

HSPD1, ENSDNOG00000013226

Aliases:None
Description:heat shock 60kDa protein 1 (chaperonin) [Source:HGNC Symbol;Acc:5261]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_55615:3219..11399(-)


>ENSDNOG00000013226
ATGCTTCGATTACCCGCAGTCCTTCGCCAGATGAGGCCAGTGTCCAGGGCATTGGCTCCTCATCTCATTCGGGCATATGC
CAAAGATGTGAAATTCGGTGCCGATGCCCGAGCCTTAATGCTTCAAGGTGTAGACCTTTTAGCTGATGCTGTAGCCGTTA
CTATGGGGCCAAAGGGAAGAACAGTGATTATTGAACAGAGTTGGGGAAGTCCCAAAGTAACAAAAGATGGTGTGACCGTT
GCAAAATCAATTGATTTGAAGGATAAATATAAAAATATTGGAGCTAAGCTTGTTCAGGATGTTGCCAATAACACAAATGA
AGAGGCTGGGGATGGCACCACCACTGCTACTGTACTGGCACGCTCTATTGCTAAGGAAGGCTTTGAGAAGATTAGCAAAG
GTGCTAATCCAGTAGAAATCAGGAGAGGTGTGATGTTAGCTGTTGATGCTGTAATTGCTGAACTTAAGAAGCAGTCTAAA
CCTGTGACAACCCCTGAAGAAATTGCTCAGGTTGCTACAATTTCTGCAAATGGAGACAAAGAAATTGGCAATATCATTTC
TGATGCAATGAAAAAGGTTGGAAGAAAGGGTGTCATCACAGTAAAGGATGGAAAAACATTGAATGATGAATTAGAAATCA
TTGAAGGCATGAAGTTTGATCGGGGTTATATTTCTCCATATTTTATTAATACATCAAAAGGTCAGAAATGTGAATTCCAG
GATGCCTATGTTCTGTTAAGTGAAAAGAAAATTTCTAGCATTCAGTCCATTGTAACTGCTCTTGAAATTGCCAATGCTTA
CCGTAAGCCCTTGGTCATAATTGCTGAAGATGTTGATGGAGAAGCTCTAAGTACACTTGTTTTGAATGTGTTTGGAGAAG
AGGGGTTGAATCTAAACCTTGAAGATGTTCAGGCTCACGATTTGGGAAAAGTTGGAGAGGTCATTGTGACCAAAGATGAT
GCCATGTTCTTGAAAGGAAAAGGTGATAAAGCTCAAATTGAAAAACGTATTCAAGAAATCACTGAGCAGTTAGATATCAC
AACTAGTGAATATGAAAAGGAAAAACTGAGTGAACGTTTAGCAAAACTTTCAGATGGAGTTGCTGTGCTGAAGGTTGGTG
GAACAAGTGATGTGGAAGTGAATGAAAAGAAAGACAGAGTTACAGATGCACTCAATGCTACACGAGCTGCTGTTGAAGAA
GGCATTGTTCTCGGAGGTGGCTGTGCTCTGCTTCGATGCATTCCAGCCTTGGATGCACTAACTCCAACTAACGAAGATCA
AAAAATTGGTATAGAAATTATTAAAAGAACACTCAAAATTCCTGCAATGACCATTGCTAAGAATGCAGGTGTTGAAGGAT
CATTGATAGTTGAGAAAATTATACAGAGTTCCTCAGAAGTTGGTTATGATGCTATGCTTGGAGATTTTGTGAATATGGTA
GAAAAAGGAATCATTGATCCAACTAAGGTTGTAAGAACTGCTTTATTGGACGCTGCTGGGGTGGCATCTCTGTTAACCAC
AGCAGAAGTCGTAGTCACAGAAATTCCTAAAGAAGAGAAGGATGCTGGAATGGGCGGAATGGGTGGAATGGGTGGAATGG
GCGGTGGTATGGGAGGTGGCATGTTCTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 108 .32 RPM
SRP012922_cerebellum 29 .56 RPM
SRP012922_heart 46 .41 RPM
SRP012922_kidney 138 .54 RPM
SRP012922_liver 97 .22 RPM
SRP012922_lung 48 .57 RPM
SRP012922_quadricep_muscle 49 .68 RPM
SRP012922_spleen 59 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013770 ortholog_one2one 1 retrogene
retro_amel_771,
Bos taurus ENSBTAG00000012586 ortholog_one2one 1 retrogene
retro_btau_988,
Canis familiaris ENSCAFG00000010865 ortholog_one2one 4 retrogenes
retro_cfam_1185, retro_cfam_1620, retro_cfam_2165, retro_cfam_614,
Callithrix jacchus ENSCJAG00000003990 possible_ortholog 6 retrogenes
retro_cjac_1516, retro_cjac_1534, retro_cjac_1975, retro_cjac_3172, retro_cjac_3400, retro_cjac_4096,
Echinops telfairi ENSETEG00000009184 possible_ortholog 4 retrogenes
retro_etel_1440, retro_etel_426, retro_etel_885, retro_etel_925,
Loxodonta africana ENSLAFG00000000053 ortholog_one2one 1 retrogene
retro_lafr_476,
Macropus eugenii ENSMEUG00000011987 ortholog_one2one 2 retrogenes
retro_meug_1688, retro_meug_224,
Myotis lucifugus ENSMLUG00000000871 possible_ortholog 4 retrogenes
retro_mluc_1458, retro_mluc_2280, retro_mluc_2348, retro_mluc_601,
Macaca mulatta ENSMMUG00000010489 possible_ortholog 1 retrogene
retro_mmul_83,
Monodelphis domestica ENSMODG00000012289 ortholog_one2one 3 retrogenes
retro_mdom_427, retro_mdom_493, retro_mdom_756,
Mustela putorius furo ENSMPUG00000007818 ortholog_one2one 3 retrogenes
retro_mputfur_1118, retro_mputfur_245, retro_mputfur_434,
Otolemur garnettii ENSOGAG00000034053 possible_ortholog 5 retrogenes
retro_ogar_2335, retro_ogar_2420, retro_ogar_2740, retro_ogar_3221, retro_ogar_3497,
Rattus norvegicus ENSRNOG00000014525 possible_ortholog 9 retrogenes
retro_rnor_1000, retro_rnor_1006, retro_rnor_1308, retro_rnor_1578, retro_rnor_1585, retro_rnor_2812, retro_rnor_2835, retro_rnor_596, retro_rnor_905,
Tursiops truncatus ENSTTRG00000003417 ortholog_one2one 3 retrogenes
retro_ttru_1661, retro_ttru_1798, retro_ttru_951,
Xenopus tropicalis ENSXETG00000007509 ortholog_one2one 1 retrogene
retro_xtro_63,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1990 99.31 53.32
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2. retro_dnov_2113 96.21 53.32
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3. retro_dnov_2512 97.58 53.32
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Download FASTA sequences of all ENSDNOG00000013226 retrocopies