Parental gene:

Rpl23, ENSRNOG00000004107

Aliases:None
Description:60S ribosomal protein L23 [Source:UniProtKB/Swiss-Prot;Acc:P62832]
Organism:Rat (Rattus norvegicus)
Coordinates:10:85510909..85514900(-)


>ENSRNOG00000004107
ATGTCGAAGCGAGGACGTGGTGGGTCCTCCGGAGCGAAATTCCGGATTTCCCTGGGTCTTCCGGTAGGAGCTGTGATCAA
CTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCTGTGAAGGGAATCAAGGGACGGCTGAACAGACTTCCTG
CTGCTGGTGTGGGCGACATGGTGATGGCCACAGTTAAGAAAGGCAAACCAGAACTAAGGAAAAAGGTACATCCTGCAGTG
GTGATTCGACAACGAAAGTCATATCGAAGAAAAGACGGGGTGTTCCTTTATTTTGAAGATAATGCAGGGGTCATAGTAAA
CAATAAAGGCGAGATGAAAGGTTCTGCTATCACAGGTCCAGTTGCAAAGGAGTGTGCAGACTTGTGGCCCAGGATTGCAT
CCAATGCAGGAAGCATTGCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 71 .03 RPM
SRP017611_kidney 123 .17 RPM
SRP017611_liver 84 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004268 possible_ortholog 6 retrogenes
retro_amel_1791, retro_amel_226, retro_amel_308, retro_amel_880, retro_amel_918, retro_amel_990,
Bos taurus ENSBTAG00000003229 possible_ortholog 5 retrogenes
retro_btau_1588, retro_btau_349, retro_btau_65, retro_btau_953, retro_btau_974,
Canis familiaris ENSCAFG00000028955 possible_ortholog 1 retrogene
retro_cfam_118,
Choloepus hoffmanni ENSCHOG00000009153 possible_ortholog 9 retrogenes
retro_chof_1290, retro_chof_1583, retro_chof_1599, retro_chof_1610, retro_chof_2422, retro_chof_2565, retro_chof_520, retro_chof_872, retro_chof_95,
Callithrix jacchus ENSCJAG00000008311 possible_ortholog 9 retrogenes
retro_cjac_1129, retro_cjac_1483, retro_cjac_2283, retro_cjac_2598, retro_cjac_2639, retro_cjac_2772, retro_cjac_2885, retro_cjac_3128, retro_cjac_3831,
Cavia porcellus ENSCPOG00000010002 possible_ortholog 2 retrogenes
retro_cpor_1212, retro_cpor_263,
Dipodomys ordii ENSDORG00000001372 possible_ortholog 3 retrogenes
retro_dord_366, retro_dord_475, retro_dord_530,
Felis catus ENSFCAG00000014502 possible_ortholog 10 retrogenes
retro_fcat_1022, retro_fcat_1431, retro_fcat_1707, retro_fcat_1708, retro_fcat_1959, retro_fcat_242, retro_fcat_296, retro_fcat_716, retro_fcat_756, retro_fcat_859,
Homo sapiens ENSG00000125691 possible_ortholog 9 retrogenes
retro_hsap_2211, retro_hsap_2213, retro_hsap_2522, retro_hsap_3581, retro_hsap_3708, retro_hsap_3710, retro_hsap_4042, retro_hsap_4106, retro_hsap_556,
Gorilla gorilla ENSGGOG00000025082 ortholog_one2one 9 retrogenes
retro_ggor_1574, retro_ggor_1744, retro_ggor_1746, retro_ggor_2416, retro_ggor_2508, retro_ggor_256, retro_ggor_2710, retro_ggor_2757, retro_ggor_504,
Latimeria chalumnae ENSLACG00000004430 ortholog_many2many 1 retrogene
retro_lcha_16,
Loxodonta africana ENSLAFG00000028450 possible_ortholog 4 retrogenes
retro_lafr_274, retro_lafr_305, retro_lafr_375, retro_lafr_440,
Macropus eugenii ENSMEUG00000001188 possible_ortholog 2 retrogenes
retro_meug_1717, retro_meug_515,
Myotis lucifugus ENSMLUG00000015673 possible_ortholog 9 retrogenes
retro_mluc_1262, retro_mluc_1523, retro_mluc_1598, retro_mluc_1792, retro_mluc_184, retro_mluc_2051, retro_mluc_2410, retro_mluc_447, retro_mluc_560,
Macaca mulatta ENSMMUG00000004502 ortholog_one2one 9 retrogenes
retro_mmul_1598, retro_mmul_1705, retro_mmul_1955, retro_mmul_2366, retro_mmul_2391, retro_mmul_384, retro_mmul_928, retro_mmul_930, retro_mmul_935,
Monodelphis domestica ENSMODG00000012634 ortholog_one2one 3 retrogenes
retro_mdom_1949, retro_mdom_527, retro_mdom_916,
Mustela putorius furo ENSMPUG00000015075 ortholog_one2one 2 retrogenes
retro_mputfur_1138, retro_mputfur_1324,
Mus musculus ENSMUSG00000071415 possible_ortholog 10 retrogenes
retro_mmus_1146, retro_mmus_1430, retro_mmus_2153, retro_mmus_2297, retro_mmus_2319, retro_mmus_2826, retro_mmus_3603, retro_mmus_3704, retro_mmus_583, retro_mmus_657,
Nomascus leucogenys ENSNLEG00000000642 ortholog_one2one 7 retrogenes
retro_nleu_1506, retro_nleu_181, retro_nleu_2056, retro_nleu_2337, retro_nleu_2988, retro_nleu_574, retro_nleu_8,
Ornithorhynchus anatinus ENSOANG00000001230 possible_ortholog 1 retrogene
retro_oana_76,
Oryctolagus cuniculus ENSOCUG00000013915 possible_ortholog 6 retrogenes
retro_ocun_1027, retro_ocun_1196, retro_ocun_1270, retro_ocun_1919, retro_ocun_251, retro_ocun_482,
Otolemur garnettii ENSOGAG00000012445 possible_ortholog 7 retrogenes
retro_ogar_1050, retro_ogar_1645, retro_ogar_1695, retro_ogar_2250, retro_ogar_277, retro_ogar_3145, retro_ogar_539,
Ochotona princeps ENSOPRG00000001957 possible_ortholog 10 retrogenes
retro_opri_1079, retro_opri_1216, retro_opri_137, retro_opri_14, retro_opri_178, retro_opri_202, retro_opri_224, retro_opri_481, retro_opri_639, retro_opri_684,
Pongo abelii ENSPPYG00000008501 possible_ortholog 10 retrogenes
retro_pabe_2083, retro_pabe_2085, retro_pabe_2951, retro_pabe_3145, retro_pabe_3147, retro_pabe_3316, retro_pabe_3340, retro_pabe_3362, retro_pabe_455, retro_pabe_512,
Pan troglodytes ENSPTRG00000009079 possible_ortholog 9 retrogenes
retro_ptro_1467, retro_ptro_164, retro_ptro_1677, retro_ptro_1679, retro_ptro_2428, retro_ptro_2512, retro_ptro_2513, retro_ptro_2738, retro_ptro_417,
Pteropus vampyrus ENSPVAG00000002277 possible_ortholog 2 retrogenes
retro_pvam_488, retro_pvam_890,
Sus scrofa ENSSSCG00000021590 possible_ortholog 3 retrogenes
retro_sscr_1115, retro_sscr_135, retro_sscr_332,
Ictidomys tridecemlineatus ENSSTOG00000014279 possible_ortholog 2 retrogenes
retro_itri_122, retro_itri_1577,
Vicugna pacos ENSVPAG00000005694 possible_ortholog 2 retrogenes
retro_vpac_29, retro_vpac_634,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_347 80.43 98.57
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2. retro_rnor_498 87.50 68.57
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3. retro_rnor_941 80.15 95.71
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4. retro_rnor_1195 79.17 100.00
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5. retro_rnor_1539 68.53 99.29
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6. retro_rnor_1622 71.53 100.00
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7. retro_rnor_2445 54.88 56.43
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8. retro_rnor_2483 89.01 64.29
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9. retro_rnor_2688 92.14 100.00
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10. retro_rnor_2981 66.42 97.14
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Download FASTA sequences of all ENSRNOG00000004107 retrocopies