RetrogeneDB - Parental gene ENSCJAG00000008311 details

                            
>ENSCJAG00000008311
ATGTCGAAGCGAGGACGTGGTGGGTCCTCTGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTAGGAGCTGTGATCAA

CTGTGCTGACAACACAGGAGCCAAAAACCTGTATATCATCTCTGTGAAGGGGATCAAGGGACGGCTGAACAGACTTCCCG

CTGCTGGTGTCGGTGACATGGTGATGGCCACAGTCAAGAAAGGCAAACCAGAGCTCAGAAAAAAGGTACATCCAGCAGTG

GTCATTCGACAACGAAAGTCATACCGGAGAAAAGATGGCGTGTTTCTTTATTTTGAAGATAATGCAGGGGTCATAGTGAA

CAATAAAGGCGAGATGAAAGGTTCTGCCATTACAGGACCAGTAGCAAAGGAGTGTGCAGACCTGTGGCCCCGGATTGCAT

CCAATGCTGGCAGCATTGCATGA

Library	Parental gene expression (RPM)
SRP051959_colon	110 .29 RPM
SRP051959_heart	107 .63 RPM
SRP051959_kidney	117 .81 RPM
SRP051959_liver	154 .01 RPM
SRP051959_lung	141 .15 RPM
SRP051959_lymph_node	268 .98 RPM
SRP051959_skeletal_muscle	116 .03 RPM
SRP051959_spleen	205 .57 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000004268	possible_ortholog	6 retrogenes	retro_amel_1791, retro_amel_226, retro_amel_308, retro_amel_880, retro_amel_918, retro_amel_990,
Bos taurus	ENSBTAG00000003229	possible_ortholog	5 retrogenes	retro_btau_1588, retro_btau_349, retro_btau_65, retro_btau_953, retro_btau_974,
Canis familiaris	ENSCAFG00000028955	possible_ortholog	1 retrogene	retro_cfam_118,
Choloepus hoffmanni	ENSCHOG00000009153	possible_ortholog	9 retrogenes	retro_chof_1290, retro_chof_1583, retro_chof_1599, retro_chof_1610, retro_chof_2422, retro_chof_2565, retro_chof_520, retro_chof_872, retro_chof_95,
Cavia porcellus	ENSCPOG00000010002	possible_ortholog	2 retrogenes	retro_cpor_1212, retro_cpor_263,
Dipodomys ordii	ENSDORG00000001372	ortholog_one2one	3 retrogenes	retro_dord_366, retro_dord_475, retro_dord_530,
Felis catus	ENSFCAG00000014502	ortholog_one2one	10 retrogenes	retro_fcat_1022, retro_fcat_1431, retro_fcat_1707, retro_fcat_1708, retro_fcat_1959, retro_fcat_242, retro_fcat_296, retro_fcat_716, retro_fcat_756, retro_fcat_859,
Homo sapiens	ENSG00000125691	ortholog_one2one	9 retrogenes	retro_hsap_2211, retro_hsap_2213, retro_hsap_2522, retro_hsap_3581, retro_hsap_3708, retro_hsap_3710, retro_hsap_4042, retro_hsap_4106, retro_hsap_556,
Gorilla gorilla	ENSGGOG00000025082	possible_ortholog	9 retrogenes	retro_ggor_1574, retro_ggor_1744, retro_ggor_1746, retro_ggor_2416, retro_ggor_2508, retro_ggor_256, retro_ggor_2710, retro_ggor_2757, retro_ggor_504,
Latimeria chalumnae	ENSLACG00000004430	ortholog_many2many	1 retrogene	retro_lcha_16,
Loxodonta africana	ENSLAFG00000028450	possible_ortholog	4 retrogenes	retro_lafr_274, retro_lafr_305, retro_lafr_375, retro_lafr_440,
Macropus eugenii	ENSMEUG00000001188	possible_ortholog	2 retrogenes	retro_meug_1717, retro_meug_515,
Myotis lucifugus	ENSMLUG00000015673	possible_ortholog	9 retrogenes	retro_mluc_1262, retro_mluc_1523, retro_mluc_1598, retro_mluc_1792, retro_mluc_184, retro_mluc_2051, retro_mluc_2410, retro_mluc_447, retro_mluc_560,
Macaca mulatta	ENSMMUG00000004502	possible_ortholog	9 retrogenes	retro_mmul_1598, retro_mmul_1705, retro_mmul_1955, retro_mmul_2366, retro_mmul_2391, retro_mmul_384, retro_mmul_928, retro_mmul_930, retro_mmul_935,
Monodelphis domestica	ENSMODG00000012634	possible_ortholog	3 retrogenes	retro_mdom_1949, retro_mdom_527, retro_mdom_916,
Mustela putorius furo	ENSMPUG00000015075	possible_ortholog	2 retrogenes	retro_mputfur_1138, retro_mputfur_1324,
Mus musculus	ENSMUSG00000071415	possible_ortholog	10 retrogenes	retro_mmus_1146, retro_mmus_1430, retro_mmus_2153, retro_mmus_2297, retro_mmus_2319, retro_mmus_2826, retro_mmus_3603, retro_mmus_3704, retro_mmus_583, retro_mmus_657,
Nomascus leucogenys	ENSNLEG00000000642	possible_ortholog	7 retrogenes	retro_nleu_1506, retro_nleu_181, retro_nleu_2056, retro_nleu_2337, retro_nleu_2988, retro_nleu_574, retro_nleu_8,
Ornithorhynchus anatinus	ENSOANG00000001230	possible_ortholog	1 retrogene	retro_oana_76,
Oryctolagus cuniculus	ENSOCUG00000013915	ortholog_one2one	6 retrogenes	retro_ocun_1027, retro_ocun_1196, retro_ocun_1270, retro_ocun_1919, retro_ocun_251, retro_ocun_482,
Otolemur garnettii	ENSOGAG00000012445	possible_ortholog	7 retrogenes	retro_ogar_1050, retro_ogar_1645, retro_ogar_1695, retro_ogar_2250, retro_ogar_277, retro_ogar_3145, retro_ogar_539,
Ochotona princeps	ENSOPRG00000001957	possible_ortholog	10 retrogenes	retro_opri_1079, retro_opri_1216, retro_opri_137, retro_opri_14, retro_opri_178, retro_opri_202, retro_opri_224, retro_opri_481, retro_opri_639, retro_opri_684,
Pongo abelii	ENSPPYG00000008501	possible_ortholog	10 retrogenes	retro_pabe_2083, retro_pabe_2085, retro_pabe_2951, retro_pabe_3145, retro_pabe_3147, retro_pabe_3316, retro_pabe_3340, retro_pabe_3362, retro_pabe_455, retro_pabe_512,
Pan troglodytes	ENSPTRG00000009079	possible_ortholog	9 retrogenes	retro_ptro_1467, retro_ptro_164, retro_ptro_1677, retro_ptro_1679, retro_ptro_2428, retro_ptro_2512, retro_ptro_2513, retro_ptro_2738, retro_ptro_417,
Pteropus vampyrus	ENSPVAG00000002277	possible_ortholog	2 retrogenes	retro_pvam_488, retro_pvam_890,
Rattus norvegicus	ENSRNOG00000004107	possible_ortholog	10 retrogenes	retro_rnor_1195, retro_rnor_1539, retro_rnor_1622, retro_rnor_2445, retro_rnor_2483, retro_rnor_2688, retro_rnor_2981, retro_rnor_347, retro_rnor_498, retro_rnor_941,
Sus scrofa	ENSSSCG00000021590	possible_ortholog	3 retrogenes	retro_sscr_1115, retro_sscr_135, retro_sscr_332,
Ictidomys tridecemlineatus	ENSSTOG00000014279	ortholog_one2one	2 retrogenes	retro_itri_122, retro_itri_1577,
Vicugna pacos	ENSVPAG00000005694	possible_ortholog	2 retrogenes	retro_vpac_29, retro_vpac_634,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cjac_1129	67.42	92.86	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cjac_1483	64.37	61.43	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cjac_2283	71.26	62.14	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cjac_2598	84.29	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cjac_2639	83.69	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cjac_2772	71.13	98.57	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cjac_2885	87.86	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cjac_3128	73.63	61.43	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cjac_3831	83.67	69.29	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCJAG00000008311 retrocopies

Parental gene:	RPL23, ENSCJAG00000008311
Aliases:	None
Description:	ribosomal protein L23 [Source:HGNC Symbol;Acc:10316]
Organism:	*Marmoset (Callithrix jacchus)*
Coordinates:	5:110727037..110733017(-)

Parental gene:

RPL23, ENSCJAG00000008311