Parental gene:

ARF1, ENSOCUG00000023645

Aliases:None
Description:ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL019112:79656..80606(-)


>ENSOCUG00000023645
ATGGGGAATATCTTTGCAAACCTCTTCAAAGGCCTTTTTGGCAAAAAGGAAATGCGCATTCTGATGGTGGGCCTGGATGC
TGCAGGGAAGACGACGATTCTGTACAAGCTGAAGCTCGGTGAGATCGTGACCACCATCCCCACCATAGGTTTCAACGTGG
AGACTGTTGAATACAAGAACATCAGCTTCACCGTGTGGGACGTGGGTGGCCAGGACAAGATTCGGCCACTGTGGCGCCAC
TACTTCCAGAACACCCAAGGCTTGATCTTTGTGGTGGATAGCAATGACAGAGAGCGAGTGAACGAGGCCCGGGAGGAGCT
CATGAGGATGCTGGCTGAGGATGAGCTGCGAGACGCAGTCCTCCTGGTGTTTGCCAACAAGCAGGACCTCCCAAATGCAA
TGAACGCAGCTGAAATCACAGACAAGCTGGGGCTGCACTCCCTACGCCACAGGAACTGGTACATTCAGGCCACCTGCGCC
ACCAGCGGGGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 79 .36 RPM
SRP017611_kidney 83 .42 RPM
SRP017611_liver 29 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 possible_ortholog 1 retrogene
retro_apla_4,
Bos taurus ENSBTAG00000007725 possible_ortholog 2 retrogenes
retro_btau_1257, retro_btau_1390,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Cavia porcellus ENSCPOG00000021174 ortholog_one2one 1 retrogene
retro_cpor_1310,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000010454 possible_ortholog 3 retrogenes
retro_dnov_2375, retro_dnov_2459, retro_dnov_26,
Erinaceus europaeus ENSEEUG00000004638 possible_ortholog 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Ficedula albicollis ENSFALG00000001088 possible_ortholog 1 retrogene
retro_falb_2,
Felis catus ENSFCAG00000029374 ortholog_one2one 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000143761 ortholog_one2one 3 retrogenes
retro_hsap_1008, retro_hsap_1160, retro_hsap_3763,
Gallus gallus ENSGALG00000005393 ortholog_one2many 1 retrogene
retro_ggal_7,
Gorilla gorilla ENSGGOG00000011263 ortholog_one2one 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Mus musculus ENSMUSG00000048076 ortholog_one2one 1 retrogene
retro_mmus_1718,
Nomascus leucogenys ENSNLEG00000014137 possible_ortholog 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Oryctolagus cuniculus ENSOCUG00000000824 within_species_paralog 4 retrogenes
retro_ocun_1007, retro_ocun_1502, retro_ocun_1868, retro_ocun_987,
Oryctolagus cuniculus ENSOCUG00000014090 other_paralog 2 retrogenes
retro_ocun_1942, retro_ocun_751,
Oryctolagus cuniculus ENSOCUG00000023009 other_paralog 1 retrogene
retro_ocun_1404,
Oryctolagus cuniculus ENSOCUG00000023198 within_species_paralog 1 retrogene
retro_ocun_132,
Otolemur garnettii ENSOGAG00000010974 possible_ortholog 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Ochotona princeps ENSOPRG00000015063 possible_ortholog 2 retrogenes
retro_opri_317, retro_opri_759,
Pongo abelii ENSPPYG00000000148 possible_ortholog 3 retrogenes
retro_pabe_3159, retro_pabe_849, retro_pabe_965,
Pelodiscus sinensis ENSPSIG00000009767 possible_ortholog 1 retrogene
retro_psin_12,
Pan troglodytes ENSPTRG00000002066 possible_ortholog 2 retrogenes
retro_ptro_112, retro_ptro_5,
Pteropus vampyrus ENSPVAG00000007383 possible_ortholog 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000030591 possible_ortholog 3 retrogenes
retro_rnor_1268, retro_rnor_1348, retro_rnor_1950,
Sarcophilus harrisii ENSSHAG00000014599 possible_ortholog 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Sus scrofa ENSSSCG00000013992 possible_ortholog 2 retrogenes
retro_sscr_429, retro_sscr_82,
Ictidomys tridecemlineatus ENSSTOG00000009288 possible_ortholog 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Tupaia belangeri ENSTBEG00000009218 ortholog_one2one 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Taeniopygia guttata ENSTGUG00000000233 possible_ortholog 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000014186 ortholog_one2one 2 retrogenes
retro_ttru_1679, retro_ttru_347,
Vicugna pacos ENSVPAG00000003224 possible_ortholog 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_247 97.24 100.00
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2. retro_ocun_1137 68.00 54.14
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Download FASTA sequences of all ENSOCUG00000023645 retrocopies