Common name: Zebrafinch
Latin name: Taeniopygia guttata
Genome assembly: taeGut3.2.4
All retrocopies: 36
Parental genes: 31

Summary: Number of retrocopies :
Conserved ORF: 18 ORF 18 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_tgut_1 82.56 % 82.64 % ORF
2. retro_tgut_2 70.24 % 87.96 % ORF
3. retro_tgut_3 54.27 % 100.00 % ORF
4. retro_tgut_4 70.73 % 99.19 % ORF
5. retro_tgut_5 94.05 % 76.96 % ORF
6. retro_tgut_6 87.84 % 100.00 % ORF
7. retro_tgut_7 88.00 % 96.29 % ORF
8. retro_tgut_8 97.72 % 99.03 % ORF
9. retro_tgut_9 91.03 % 100.00 % ORF
10. retro_tgut_10 52.54 % 51.08 % ORF
11. retro_tgut_11 89.01 % 92.39 % ORF
12. retro_tgut_12 63.31 % 78.53 % ORF
13. retro_tgut_13 62.30 % 78.53 % ORF
14. retro_tgut_14 79.87 % 100.00 % ORF
15. retro_tgut_15 91.04 % 99.81 % ORF
16. retro_tgut_16 92.27 % 91.86 % ORF
17. retro_tgut_17 89.85 % 100.00 % ORF
18. retro_tgut_18 63.51 % 98.65 % ORF
19. retro_tgut_20 57.33 % 50.68 % ORF
20. retro_tgut_21 62.79 % 56.21 % ORF
21. retro_tgut_23 85.57 % 61.53 % ORF
22. retro_tgut_24 78.28 % 68.72 % ORF
23. retro_tgut_25 66.67 % 69.03 % ORF
24. retro_tgut_26 75.25 % 88.05 % ORF
25. retro_tgut_27 85.64 % 64.12 % ORF
26. retro_tgut_28 79.83 % 54.38 % ORF
27. retro_tgut_29 86.14 % 60.48 % ORF
28. retro_tgut_30 90.86 % 99.81 % ORF
29. retro_tgut_33 86.63 % 60.48 % ORF
30. retro_tgut_35 73.87 % 58.33 % ORF
31. retro_tgut_36 76.50 % 63.44 % ORF
32. retro_tgut_37 88.60 % 90.84 % ORF
33. retro_tgut_40 84.77 % 64.17 % ORF
34. retro_tgut_42 76.87 % 80.77 % ORF
35. retro_tgut_44 52.38 % 70.27 % ORF
36. retro_tgut_45 65.00 % 67.57 % ORF
# Ensembl ID Symbol Description
1. ENSTGUG00000008995 PRPF38A PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:HGNC Symbol;Acc:25930]
2. ENSTGUG00000013808
3. ENSTGUG00000012340 SNW1 SNW domain containing 1 [Source:HGNC Symbol;Acc:16696]
4. ENSTGUG00000012364 DNAJC15 DnaJ (Hsp40) homolog, subfamily C, member 15 [Source:HGNC Symbol;Acc:20325]
5. ENSTGUG00000000876
6. ENSTGUG00000001012 BCAS2 putative breast carcinoma amplified sequence 2 [Source:RefSeq peptide;Acc:NP_001232208]
7. ENSTGUG00000018334 RFX8 RFX family member 8, lacking RFX DNA binding domain [Source:HGNC Symbol;Acc:37253]
8. ENSTGUG00000017276
9. ENSTGUG00000016168
10. ENSTGUG00000015384
11. ENSTGUG00000006076
12. ENSTGUG00000015438
13. ENSTGUG00000002581 CALM2 calmodulin 2 (phosphorylase kinase, delta) (CALM2), mRNA [Source:RefSeq mRNA;Acc:NM_001198599]
14. ENSTGUG00000008355 RPL27A ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]
15. ENSTGUG00000016647
16. ENSTGUG00000002119
17. ENSTGUG00000008933 SHCBP1 SHC SH2-domain binding protein 1 [Source:HGNC Symbol;Acc:29547]
18. ENSTGUG00000014764
19. ENSTGUG00000017533 RHOC ras homolog family member C [Source:HGNC Symbol;Acc:669]
20. ENSTGUG00000002412
21. ENSTGUG00000010655
22. ENSTGUG00000012078 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:HGNC Symbol;Acc:12855]
23. ENSTGUG00000009556
24. ENSTGUG00000003998
25. ENSTGUG00000001947 zinc finger protein 183-like (RNF113A2), mRNA [Source:RefSeq mRNA;Acc:NM_001245166]
26. ENSTGUG00000015754
27. ENSTGUG00000008426
28. ENSTGUG00000000491 HSPA8 heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241]
29. ENSTGUG00000000233 ARF1 ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652]
30. ENSTGUG00000016956
31. ENSTGUG00000010772
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)