RetrogeneDB ID: | retro_tgut_44 | ||
Retrocopy location | Organism: | Zebrafinch (Taeniopygia guttata) | |
| Coordinates: | Un:172665836..172666149(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RFX8 | ||
| Ensembl ID: | ENSTGUG00000018334 | ||
| Aliases: | None | ||
| Description: | RFX family member 8, lacking RFX DNA binding domain [Source:HGNC Symbol;Acc:37253] |
Retrocopy-Parental alignment summary:
>retro_tgut_44
CATGCTTTGGACAAGAGATCAGAATAGGTAATATCCAAAGATGTCTTTTAACCTAAGACATTTTAGGATTCTAATAGAAA
AACATGCTTGTTGCTTTTTTCACATTTGCAGTTTGTACAGGGAAAATGGTCTGTCACACAGAAAGGAATTCTTTTAACCA
ACTTTATCATAAACCATTTTTCTTCTTTATCTGCAGCCAAGCAAAAATAAAGAGGCATTTAAAGAGCAGGCATCAGATTT
CATGTTGAAATGGAGCCTCCTACTGAGCAATGTAGGCAAGATTCTGACCATCAACAGGACAGAGAGTTTTGGT
ORF - retro_tgut_44 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.38 % |
| Parental protein coverage: | 70.27 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | HAIFKEKSLDVTKDLFQEKSRNPKKRQRNIQLKCLKNFISSLASSTDIQDLLS-CLSSDLQTFVIKPSKN |
| HA..K.......KD.F..K......R.....L.....F.....S.T....LL...LS.........PSKN | |
| Retrocopy | HALDKRSE*VISKDVF*PKTF*DSNRKTCLLLFSHLQFVQGKWSVTQKGILLT>TLS*TIFLLYLQPSKN |
| Parental | KEAFKEQASDFMLKWSLLLSNVGKILTINRTESFG |
| KEAFKEQASDFMLKWSLLLSNVGKILTINRTESFG | |
| Retrocopy | KEAFKEQASDFMLKWSLLLSNVGKILTINRTESFG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Taeniopygia guttata was not studied using RNA-Seq expression data.
Taeniopygia guttata was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tgut_44 retrocopy.
Taeniopygia guttata was not studied using FANTOM5 data.
retro_tgut_44 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tgut_44 has 0 orthologous retrocopies within neognath group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Taeniopygia guttata | ENSTGUG00000018334 | 1 retrocopy |
retro_tgut_44 ,
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