RetrogeneDB ID: | retro_tgut_42 | ||
Retrocopy location | Organism: | Zebrafinch (Taeniopygia guttata) | |
| Coordinates: | Un:158345311..158345752(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSTGUG00000017276 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_tgut_42
TTTGTTGACTGGGCCCTGCAACCAATTTGTCGACATTTTTCCAACGTGATGATTTATCACTATATGGATGACATTCTCAT
TACCACCAAACAGCCATTGGCAGATGCAGACTTGAATTGGTTCTTTTCACAACTGAAGCAGCACGGATTGACCGTGTCCC
CAGAAAAAATACAGCCATCAGTCCCCTGGAAATACTTAGGCTGGCTGATCACGGATGCACAAATTCAACCCCAGAAACTT
ACCTTACACGTTAACATTTCTACTTTACATGATGCCCAGAGACTCTTTGGAGACCTGCAGTGGGTTTGTACCATTGTAGG
AATCACCAACGATGATCTGCAACAATTTTTGCCATGGTTCCATGGCAGTAATGCCAACAGCCCTCGAGTCTGCACCCCTG
AACAACAAAAGGCTTTGATTCGGGTTTCAGAAAAATTACAA
ORF - retro_tgut_42 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.87 % |
| Parental protein coverage: | 80.77 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | FVIHILSPICEKFPDAILLYYMDDSLICTQTNVYLDTLTRSQARVIQHGLTVSPEKIQTSVPWKYLGWLI |
| FV...L.PIC..F.......YMDD.LI.T........L........QHGLTVSPEKIQ.SVPWKYLGWLI | |
| Retrocopy | FVDWALQPICRHFSNVMIYHYMDDILITTKQPLADADLNWFFSQLKQHGLTVSPEKIQPSVPWKYLGWLI |
| Parental | TDAQIQPQKLTLHVNISTLHDAQRLFGDLQWVRTIVGITNDDLQQFLPWLHGSNANSPRVCTPEQQKALI |
| TDAQIQPQKLTLHVNISTLHDAQRLFGDLQWV.TIVGITNDDLQQFLPW.HGSNANSPRVCTPEQQKALI | |
| Retrocopy | TDAQIQPQKLTLHVNISTLHDAQRLFGDLQWVCTIVGITNDDLQQFLPWFHGSNANSPRVCTPEQQKALI |
| Parental | RVSEKLQ |
| RVSEKLQ | |
| Retrocopy | RVSEKLQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Taeniopygia guttata was not studied using RNA-Seq expression data.
Taeniopygia guttata was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tgut_42 retrocopy.
Taeniopygia guttata was not studied using FANTOM5 data.
retro_tgut_42 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tgut_42 has 0 orthologous retrocopies within neognath group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Taeniopygia guttata | ENSTGUG00000017276 | 1 retrocopy |
retro_tgut_42 ,
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