Parental gene:

ARF1, ENSGALG00000005393

Aliases:None
Description:ADP-ribosylation factor 1 [Source:RefSeq peptide;Acc:NP_001006352]
Organism:Chicken (Gallus gallus)
Coordinates:2:2357323..2369250(-)


>ENSGALG00000005393
ATGGGAAATATTTTTGCTAACCTCTTCAAAGGCCTTTTTGGCAAAAAAGAAATGCGTATTCTAATGGTTGGTCTGGATGC
TGCAGGAAAGACGACTATTTTGTACAAACTTAAACTTGGTGAAATAGTAACTACTATTCCTACTATAGGTTTCAATGTGG
AAACAGTAGAATACAAGAACATTAGCTTCACGGTGTGGGATGTAGGTGGCCAGGATAAGATCAGACCACTCTGGCGCCAT
TATTTCCAGAACACACAAGGTTTGATTTTTGTGGTTGACAGTAATGACAGAGAACGAGTGAACGAGGCCAGAGAAGAGCT
GATGAGAATGCTGGCAGAAGATGAGCTTAGAGATGCTGTTCTATTAGTGTTTGCTAACAAACAGGACCTGCCCAACGCCA
TGAATGCAGCAGAAATCACAGACAAACTCGGACTGCATTCTCTTCGTCACAGGAACTGGTACATCCAGGCCACCTGCGCC
ACTAGTGGAGACGGGCTCTATGAAGGACTGGACTGGTTGTCCAATCAGCTCCGAAACCAGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 58 .17 RPM
SRP007412_cerebellum 55 .99 RPM
SRP007412_heart 30 .81 RPM
SRP007412_kidney 59 .48 RPM
SRP007412_liver 39 .89 RPM
SRP007412_testis 61 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 ortholog_one2one 1 retrogene
retro_apla_4,
Bos taurus ENSBTAG00000007725 ortholog_one2one 2 retrogenes
retro_btau_1257, retro_btau_1390,
Callithrix jacchus ENSCJAG00000016671 ortholog_one2many 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Cavia porcellus ENSCPOG00000021174 ortholog_one2one 1 retrogene
retro_cpor_1310,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000010454 ortholog_one2one 3 retrogenes
retro_dnov_2375, retro_dnov_2459, retro_dnov_26,
Dipodomys ordii ENSDORG00000007603 ortholog_one2one 4 retrogenes
retro_dord_31, retro_dord_351, retro_dord_409, retro_dord_573,
Erinaceus europaeus ENSEEUG00000004638 ortholog_one2one 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Ficedula albicollis ENSFALG00000001088 ortholog_one2one 1 retrogene
retro_falb_2,
Felis catus ENSFCAG00000029374 ortholog_one2one 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000143761 ortholog_one2one 3 retrogenes
retro_hsap_1008, retro_hsap_1160, retro_hsap_3763,
Gallus gallus ENSGALG00000008314 other_paralog 1 retrogene
retro_ggal_25,
Gorilla gorilla ENSGGOG00000011263 ortholog_one2one 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 ortholog_one2many 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 ortholog_one2many 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Mus musculus ENSMUSG00000048076 ortholog_one2one 1 retrogene
retro_mmus_1718,
Nomascus leucogenys ENSNLEG00000014137 ortholog_one2one 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Oryctolagus cuniculus ENSOCUG00000023645 ortholog_one2many 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Otolemur garnettii ENSOGAG00000010974 ortholog_one2one 4 retrogenes
retro_ogar_2431, retro_ogar_295, retro_ogar_3353, retro_ogar_974,
Ochotona princeps ENSOPRG00000015063 ortholog_one2one 2 retrogenes
retro_opri_317, retro_opri_759,
Procavia capensis ENSPCAG00000014202 ortholog_one2many 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pongo abelii ENSPPYG00000000148 ortholog_one2one 3 retrogenes
retro_pabe_3159, retro_pabe_849, retro_pabe_965,
Pelodiscus sinensis ENSPSIG00000009767 ortholog_one2one 1 retrogene
retro_psin_12,
Pan troglodytes ENSPTRG00000002066 ortholog_one2many 2 retrogenes
retro_ptro_112, retro_ptro_5,
Pteropus vampyrus ENSPVAG00000007383 ortholog_one2one 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000030591 ortholog_one2one 3 retrogenes
retro_rnor_1268, retro_rnor_1348, retro_rnor_1950,
Sarcophilus harrisii ENSSHAG00000014599 ortholog_one2one 3 retrogenes
retro_shar_106, retro_shar_462, retro_shar_725,
Sus scrofa ENSSSCG00000013992 ortholog_one2one 2 retrogenes
retro_sscr_429, retro_sscr_82,
Ictidomys tridecemlineatus ENSSTOG00000009288 ortholog_one2one 3 retrogenes
retro_itri_1754, retro_itri_273, retro_itri_363,
Tupaia belangeri ENSTBEG00000009218 ortholog_one2one 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Taeniopygia guttata ENSTGUG00000000233 ortholog_one2one 1 retrogene
retro_tgut_2,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000014186 ortholog_one2one 2 retrogenes
retro_ttru_1679, retro_ttru_347,
Vicugna pacos ENSVPAG00000003224 ortholog_one2one 4 retrogenes
retro_vpac_281, retro_vpac_328, retro_vpac_6, retro_vpac_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggal_7 69.43 86.74
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Download FASTA sequences of all ENSGALG00000005393 retrocopies