Parental gene:

ARF1, ENSPTRG00000002066

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:207224828..207241621(+)


>ENSPTRG00000002066
ATGGGGAACATCTTCGCCAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATCCTCATGGTGGGCCTGGATGC
TGCAGGGAAGACCACGATCCTCTACAAGCTTAAGCTGGGTGAGATCGTGACCACCATTCCCACCATAGGCTTCAACGTGG
AAACCGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATCCGGCCCCTGTGGCGCCAC
TACTTCCAGAACACACAAGGCCTGATCTTCGTGGTGGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAGGAGCT
CATGAGGATGCTGGCCGAGGACGAGCTCCGGGATGCTGTCCTCCTGGTGTTCGCCAACAAGCAGGACCTCCCCAACGCCA
TGAATGCGGCTGAGATCACAGACAAGCTGGGGCTGCACTCCCTACGCCACAGAAACTGGTACATTCAGGCCACCTGCGCC
ACCAGCGGTGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 207 .11 RPM
SRP007412_cerebellum 87 .58 RPM
SRP007412_heart 56 .54 RPM
SRP007412_kidney 135 .31 RPM
SRP007412_liver 111 .23 RPM
SRP007412_testis 77 .04 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 ortholog_one2one 1 retrogene
retro_apla_4,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Cavia porcellus ENSCPOG00000021174 possible_ortholog 1 retrogene
retro_cpor_1310,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Dasypus novemcinctus ENSDNOG00000010454 ortholog_one2one 3 retrogenes
retro_dnov_2375, retro_dnov_2459, retro_dnov_26,
Dipodomys ordii ENSDORG00000007603 possible_ortholog 4 retrogenes
retro_dord_31, retro_dord_351, retro_dord_409, retro_dord_573,
Erinaceus europaeus ENSEEUG00000004638 ortholog_one2one 4 retrogenes
retro_eeur_328, retro_eeur_660, retro_eeur_684, retro_eeur_76,
Felis catus ENSFCAG00000029374 possible_ortholog 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000143761 possible_ortholog 3 retrogenes
retro_hsap_1008, retro_hsap_1160, retro_hsap_3763,
Gallus gallus ENSGALG00000005393 ortholog_one2many 1 retrogene
retro_ggal_7,
Gorilla gorilla ENSGGOG00000011263 possible_ortholog 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 ortholog_one2one 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Mus musculus ENSMUSG00000048076 possible_ortholog 1 retrogene
retro_mmus_1718,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pan troglodytes ENSPTRG00000015051 within_species_paralog 2 retrogenes
retro_ptro_2866, retro_ptro_888,
Tupaia belangeri ENSTBEG00000009218 possible_ortholog 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000014186 possible_ortholog 2 retrogenes
retro_ttru_1679, retro_ttru_347,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_5 70.83 92.82
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2. retro_ptro_112 100.00 100.00
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Download FASTA sequences of all ENSPTRG00000002066 retrocopies