Parental gene:

ARF1, ENSCPOG00000021174

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:341730..342683(+)


>ENSCPOG00000021174
ATGGGGAATATCTTCGCGAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATTCTCATGGTGGGCTTGGATGC
TGCTGGAAAGACGACGATTCTGTATAAACTGAAGCTTGGTGAAATTGTGACCACCATTCCTACCATAGGTTTCAATGTGG
AGACTGTCGAATACAAGAATATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATTCGGCCACTGTGGCGTCAC
TACTTCCAGAATACCCAAGGTTTGATCTTTGTGGTGGATAGCAATGATAGAGAGCGTGTGAATGAGGCCCGTGAGGAGCT
CATGAGAATGCTGGCCGAGGATGAGCTCCGGGATGCTGTTCTTCTTGTATTTGCCAACAAGCAGGACCTCCCTAACGCGA
TGAATGCAGCTGAAATCACAGACAAGCTGGGGCTGCACTCTCTACGCCACAGGAACTGGTACATTCAGGCCACCTGTGCC
ACCAGTGGGGACGGGCTCTATGAAGGACTGGACTGGCTGTCCAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 104 .68 RPM
SRP017611_kidney 142 .48 RPM
SRP017611_liver 84 .92 RPM
SRP040447_lung 172 .89 RPM
SRP040447_skeletal_muscle 102 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Cavia porcellus ENSCPOG00000010334 within_species_paralog 1 retrogene
retro_cpor_1261,
Cavia porcellus ENSCPOG00000025074 within_species_paralog 1 retrogene
retro_cpor_92,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Felis catus ENSFCAG00000029374 ortholog_one2one 1 retrogene
retro_fcat_1829,
Homo sapiens ENSG00000143761 ortholog_one2one 3 retrogenes
retro_hsap_1008, retro_hsap_1160, retro_hsap_3763,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Gorilla gorilla ENSGGOG00000011263 ortholog_one2one 5 retrogenes
retro_ggor_161, retro_ggor_2531, retro_ggor_3071, retro_ggor_801, retro_ggor_906,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Mus musculus ENSMUSG00000048076 ortholog_one2one 1 retrogene
retro_mmus_1718,
Oryctolagus cuniculus ENSOCUG00000023645 ortholog_one2one 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Pan troglodytes ENSPTRG00000002066 possible_ortholog 2 retrogenes
retro_ptro_112, retro_ptro_5,
Tupaia belangeri ENSTBEG00000009218 ortholog_one2one 9 retrogenes
retro_tbel_1943, retro_tbel_2224, retro_tbel_2310, retro_tbel_2358, retro_tbel_2662, retro_tbel_2770, retro_tbel_3103, retro_tbel_4217, retro_tbel_4624,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,
Tursiops truncatus ENSTTRG00000014186 ortholog_one2one 2 retrogenes
retro_ttru_1679, retro_ttru_347,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1310 66.11 98.34
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Download FASTA sequences of all ENSCPOG00000021174 retrocopies