Parental gene:

Arf1, ENSRNOG00000030591

Aliases:None
Description:ADP-ribosylation factor 1 [Source:RefSeq peptide;Acc:NP_071963]
Organism:Rat (Rattus norvegicus)
Coordinates:10:45318170..45334628(-)


>ENSRNOG00000030591
ATGGGGAATATCTTTGCAAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATTCTCATGGTGGGCCTGGATGC
TGCAGGGAAGACAACAATTCTATACAAACTGAAGCTGGGCGAAATTGTGACCACCATTCCCACCATTGGTTTCAACGTGG
AGACTGTTGAATACAAGAATATCAGCTTCACCGTGTGGGATGTGGGTGGCCAGGACAAGATTCGGCCGCTGTGGCGCCAC
TACTTCCAGAACACCCAAGGCTTGATCTTCGTAGTGGACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAAGAGCT
TATGAGGATGCTAGCTGAAGATGAGCTCCGAGATGCCGTTCTCTTGGTGTTTGCCAACAAGCAGGACCTCCCCAATGCCA
TGAATGCGGCCGAAATCACAGACAAGCTGGGGCTGCACTCTCTACGCCACAGGAACTGGTACATTCAGGCTACCTGTGCC
ACCAGCGGAGACGGGCTCTATGAAGGACTAGATTGGCTGTCTAATCAGCTCCGGAACCAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 281 .04 RPM
SRP017611_kidney 278 .71 RPM
SRP017611_liver 162 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000004509 ortholog_one2one 1 retrogene
retro_apla_4,
Callithrix jacchus ENSCJAG00000016671 possible_ortholog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Ciona savignyi ENSCSAVG00000007011 possible_ortholog 1 retrogene
retro_csav_2,
Gallus gallus ENSGALG00000005393 ortholog_one2one 1 retrogene
retro_ggal_7,
Latimeria chalumnae ENSLACG00000019009 possible_ortholog 1 retrogene
retro_lcha_10,
Myotis lucifugus ENSMLUG00000007020 possible_ortholog 6 retrogenes
retro_mluc_1631, retro_mluc_242, retro_mluc_2605, retro_mluc_428, retro_mluc_511, retro_mluc_876,
Macaca mulatta ENSMMUG00000002792 possible_ortholog 3 retrogenes
retro_mmul_237, retro_mmul_541, retro_mmul_810,
Nomascus leucogenys ENSNLEG00000014137 ortholog_one2one 3 retrogenes
retro_nleu_210, retro_nleu_227, retro_nleu_2929,
Oryctolagus cuniculus ENSOCUG00000023645 possible_ortholog 2 retrogenes
retro_ocun_1137, retro_ocun_247,
Ochotona princeps ENSOPRG00000015063 ortholog_one2one 2 retrogenes
retro_opri_317, retro_opri_759,
Procavia capensis ENSPCAG00000014202 possible_ortholog 2 retrogenes
retro_pcap_15, retro_pcap_23,
Pteropus vampyrus ENSPVAG00000007383 ortholog_one2one 1 retrogene
retro_pvam_1324,
Rattus norvegicus ENSRNOG00000012623 within_species_paralog 2 retrogenes
retro_rnor_1036, retro_rnor_1884,
Rattus norvegicus ENSRNOG00000033155 within_species_paralog 1 retrogene
retro_rnor_272,
Rattus norvegicus ENSRNOG00000048089 within_species_paralog 1 retrogene
retro_rnor_2521,
Sus scrofa ENSSSCG00000013992 ortholog_one2one 2 retrogenes
retro_sscr_429, retro_sscr_82,
Tetraodon nigroviridis ENSTNIG00000011685 possible_ortholog 1 retrogene
retro_tnig_19,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1268 70.71 53.59
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2. retro_rnor_1348 64.71 55.25
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3. retro_rnor_1950 88.65 77.90
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Download FASTA sequences of all ENSRNOG00000030591 retrocopies