Parental gene:

ENSOCUG00000015087

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018793:519038..520666(+)


>ENSOCUG00000015087
ATGGCCTCCGTCTCCGAGCTCGCCTGCATCTACTCCGCCCTCATCCTGCACGACGACGAGGTGACCGTCACGGAGGACAA
GATCAACGCCCTCATTAAAGCAGCTGGCGTCAACGTGGAGCCCTTCTGGCCTGGCTTGTTCGCGAAGGCGCTGGCCAATG
TCAACATTGGGAGCCTCATCTGCAACGTAGGGGCCGGGGGCGCTGCTCCAGCCGCTGGCGCCGCTCCGGCAGGAGGCCCT
GCACCCGCGGCCGCCGCCGCCCCAGCTGAGGAGAAGAAGGTGGAAGCCAAGAAGGAAGAATCTGAGGAGTCTGATGACGA
CATGGGCTTCGGGCTTTTTGACTGA

Library Parental gene expression (RPM)
SRP017611_brain 238 .41 RPM
SRP017611_kidney 437 .45 RPM
SRP017611_liver 172 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014251 possible_ortholog 20 retrogenes
Bos taurus ENSBTAG00000018320 possible_ortholog 4 retrogenes
Choloepus hoffmanni ENSCHOG00000005944 possible_ortholog 10 retrogenes
Callithrix jacchus ENSCJAG00000032919 possible_ortholog 19 retrogenes
Cavia porcellus ENSCPOG00000004321 possible_ortholog 6 retrogenes
Dasypus novemcinctus ENSDNOG00000014224 possible_ortholog 26 retrogenes
Equus caballus ENSECAG00000008542 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000032037 possible_ortholog 23 retrogenes
Homo sapiens ENSG00000137818 possible_ortholog 18 retrogenes
Gorilla gorilla ENSGGOG00000003980 possible_ortholog 13 retrogenes
Latimeria chalumnae ENSLACG00000012630 ortholog_many2many 1 retrogene
Loxodonta africana ENSLAFG00000032060 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
Macropus eugenii ENSMEUG00000015282 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000010542 possible_ortholog 33 retrogenes
Macaca mulatta ENSMMUG00000014888 possible_ortholog 7 retrogenes
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
Monodelphis domestica ENSMODG00000009218 possible_ortholog 4 retrogenes
Mustela putorius furo ENSMPUG00000000204 possible_ortholog 13 retrogenes
Mustela putorius furo ENSMPUG00000017096 possible_ortholog 2 retrogenes
Mus musculus ENSMUSG00000007892 possible_ortholog 6 retrogenes
Otolemur garnettii ENSOGAG00000029641 possible_ortholog 19 retrogenes
Ochotona princeps ENSOPRG00000001163 ortholog_one2one 11 retrogenes
Procavia capensis ENSPCAG00000014595 possible_ortholog 7 retrogenes
Pongo abelii ENSPPYG00000006601 possible_ortholog 5 retrogenes
Pan troglodytes ENSPTRG00000007228 possible_ortholog 1 retrogene
Rattus norvegicus ENSRNOG00000011955 possible_ortholog 6 retrogenes
Rattus norvegicus ENSRNOG00000013874 possible_ortholog 3 retrogenes
Sarcophilus harrisii ENSSHAG00000014818 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000004970 possible_ortholog 16 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027893 possible_ortholog 8 retrogenes
Tarsius syrichta ENSTSYG00000013927 possible_ortholog 1 retrogene
Tursiops truncatus ENSTTRG00000013656 possible_ortholog 20 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_48 69.51 71.93
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2. retro_ocun_551 72.17 100.00
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3. retro_ocun_647 69.84 53.51
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4. retro_ocun_884 58.33 61.40
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5. retro_ocun_1009 64.29 83.33
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6. retro_ocun_1464 61.97 61.40
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7. retro_ocun_1655 65.74 92.98
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8. retro_ocun_1735 59.05 90.35
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Download FASTA sequences of all ENSOCUG00000015087 retrocopies