Parental gene:

ENSDNOG00000014224

Aliases:None
Description:None
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3403:119183..121730(+)


>ENSDNOG00000014224
ATGGCCTCCGTCTCCGAGCTTGCCTGCATCTACTCGGCCCTCATACTCCACGACGATGAAGTCACAGTAACGGAGGATAA
GATCAATGCCCTCATTAAAGCAGCTGGTGTAAATGTTGAACCTTTCTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAACA
TCAGCATTGGGAGCCTTATCTGCAATGTAGGGGCTGGTGGACCTGCCCCAGCAGCAGGTGCGGCACCAGCAGGAGGTCCT
GCCCCCACCACCACTGCTGCCCCAGCGGAGGAGAAGAAAGTGGAAGCAAAGAAAGAAGAATCTGAGGAATCGGATGATGA
CATGGGCTTTGGTCTTTTTGACTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 855 .66 RPM
SRP012922_cerebellum 408 .28 RPM
SRP012922_heart 468 .47 RPM
SRP012922_kidney 1049 .46 RPM
SRP012922_liver 483 .62 RPM
SRP012922_lung 1291 .44 RPM
SRP012922_quadricep_muscle 1577 .15 RPM
SRP012922_spleen 1258 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014251 ortholog_one2one 20 retrogenes
retro_amel_1030, retro_amel_1076, retro_amel_110, retro_amel_1152, retro_amel_1191, retro_amel_128, retro_amel_1343, retro_amel_1345, retro_amel_1354, retro_amel_1428, retro_amel_161, retro_amel_1694, retro_amel_1696, retro_amel_1705, retro_amel_1852, retro_amel_205, retro_amel_316, retro_amel_395, retro_amel_404, retro_amel_769,
Cavia porcellus ENSCPOG00000004321 ortholog_one2one 6 retrogenes
retro_cpor_1011, retro_cpor_1058, retro_cpor_260, retro_cpor_305, retro_cpor_667, retro_cpor_75,
Latimeria chalumnae ENSLACG00000012630 ortholog_many2many 1 retrogene
retro_lcha_7,
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Macropus eugenii ENSMEUG00000015282 ortholog_many2many 2 retrogenes
retro_meug_207, retro_meug_45,
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
retro_mdom_1022,
Monodelphis domestica ENSMODG00000009218 ortholog_many2many 4 retrogenes
retro_mdom_1168, retro_mdom_2001, retro_mdom_385, retro_mdom_50,
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Ochotona princeps ENSOPRG00000001163 possible_ortholog 11 retrogenes
retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Sarcophilus harrisii ENSSHAG00000014818 possible_ortholog 6 retrogenes
retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,
Sus scrofa ENSSSCG00000004970 ortholog_one2one 16 retrogenes
retro_sscr_1105, retro_sscr_1165, retro_sscr_1184, retro_sscr_1185, retro_sscr_16, retro_sscr_176, retro_sscr_18, retro_sscr_259, retro_sscr_307, retro_sscr_323, retro_sscr_4, retro_sscr_47, retro_sscr_583, retro_sscr_776, retro_sscr_904, retro_sscr_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_17 92.52 93.86
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2. retro_dnov_20 76.52 99.12
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3. retro_dnov_146 63.87 98.25
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4. retro_dnov_179 96.49 100.00
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5. retro_dnov_240 68.75 96.49
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6. retro_dnov_405 63.72 98.25
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7. retro_dnov_561 67.26 99.12
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8. retro_dnov_601 81.52 78.95
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9. retro_dnov_746 78.76 98.25
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10. retro_dnov_1130 65.09 92.11
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11. retro_dnov_1325 77.59 100.00
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12. retro_dnov_1410 73.39 94.74
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13. retro_dnov_1439 73.50 100.00
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14. retro_dnov_1467 87.83 100.00
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15. retro_dnov_1580 85.71 98.25
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16. retro_dnov_1660 78.95 65.79
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17. retro_dnov_1667 64.10 66.67
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18. retro_dnov_1748 85.00 69.30
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19. retro_dnov_1878 63.55 91.23
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20. retro_dnov_1911 94.03 58.77
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21. retro_dnov_1967 85.96 99.12
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22. retro_dnov_2075 70.37 68.42
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23. retro_dnov_2234 88.70 100.00
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24. retro_dnov_2421 77.27 57.02
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25. retro_dnov_2618 72.17 100.00
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26. retro_dnov_2640 59.55 76.32
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Download FASTA sequences of all ENSDNOG00000014224 retrocopies