Parental gene:

ENSCPOG00000004321

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_5:58921428..58923640(+)


>ENSCPOG00000004321
ATGGCCTCCGTCTCTGAGCTCGCCTGTATCTACTCCGCTCTTATCCTGCACGACGACGAAGTGACCGTCACGGAGGATAA
GATCAATGCTCTTATTAAAGCGGCCGGCGTCAATGTGGAACCTTTCTGGCCTGGCTTGTTCGCAAAGGCCCTGGCCAATG
TCAGCATTGGGAGCCTCATCTGCAACGTAGGGGCCGGTGGCCCTGCTCCTGCAGCTGGTGCTGCCCCTGCAGGAAGCCCC
GCACCCACCACCACTGCTGCTCCAGCTGAGGAGAAGAAGGTGGAAGCAAAGAAAGAAGAATCTGAGGAGTCTGACGACGA
CATGGGCTTCGGTCTTTTTGACTAA

Library Parental gene expression (RPM)
SRP017611_brain 136 .14 RPM
SRP017611_kidney 264 .86 RPM
SRP017611_liver 118 .09 RPM
SRP040447_lung 344 .84 RPM
SRP040447_skeletal_muscle 858 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014251 ortholog_one2one 20 retrogenes
retro_amel_1030, retro_amel_1076, retro_amel_110, retro_amel_1152, retro_amel_1191, retro_amel_128, retro_amel_1343, retro_amel_1345, retro_amel_1354, retro_amel_1428, retro_amel_161, retro_amel_1694, retro_amel_1696, retro_amel_1705, retro_amel_1852, retro_amel_205, retro_amel_316, retro_amel_395, retro_amel_404, retro_amel_769,
Dasypus novemcinctus ENSDNOG00000014224 ortholog_one2one 26 retrogenes
retro_dnov_1130, retro_dnov_1325, retro_dnov_1410, retro_dnov_1439, retro_dnov_146, retro_dnov_1467, retro_dnov_1580, retro_dnov_1660, retro_dnov_1667, retro_dnov_17, retro_dnov_1748, retro_dnov_179, retro_dnov_1878, retro_dnov_1911, retro_dnov_1967, retro_dnov_20, retro_dnov_2075, retro_dnov_2234, retro_dnov_240, retro_dnov_2421, retro_dnov_2618, retro_dnov_2640, retro_dnov_405, retro_dnov_561, retro_dnov_601, retro_dnov_746,
Latimeria chalumnae ENSLACG00000012630 ortholog_many2many 1 retrogene
retro_lcha_7,
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Macropus eugenii ENSMEUG00000015282 ortholog_one2many 2 retrogenes
retro_meug_207, retro_meug_45,
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
retro_mdom_1022,
Monodelphis domestica ENSMODG00000009218 ortholog_one2many 4 retrogenes
retro_mdom_1168, retro_mdom_2001, retro_mdom_385, retro_mdom_50,
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Ochotona princeps ENSOPRG00000001163 possible_ortholog 11 retrogenes
retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Sarcophilus harrisii ENSSHAG00000014818 possible_ortholog 6 retrogenes
retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,
Sus scrofa ENSSSCG00000004970 ortholog_one2one 16 retrogenes
retro_sscr_1105, retro_sscr_1165, retro_sscr_1184, retro_sscr_1185, retro_sscr_16, retro_sscr_176, retro_sscr_18, retro_sscr_259, retro_sscr_307, retro_sscr_323, retro_sscr_4, retro_sscr_47, retro_sscr_583, retro_sscr_776, retro_sscr_904, retro_sscr_923,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_75 68.42 99.12
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2. retro_cpor_260 64.71 88.60
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3. retro_cpor_305 71.55 100.00
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4. retro_cpor_667 64.66 97.37
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5. retro_cpor_1011 71.05 99.12
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6. retro_cpor_1058 58.06 52.63
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Download FASTA sequences of all ENSCPOG00000004321 retrocopies