RetrogeneDB ID: retro_mputfur_1016

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896995.1:1075522..1075739(+)
• Located in intron of: ENSMPUG00000010166

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000017096
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1016
CCCTTCTCGGTGCTCGCCTGCATCTATGTGGCCCTCAGCCTGCTCCACGATGAGGTGACAGTCACGGAAGATAAGATCAA
TGCCCTCATTAAAGCAGCGGGTGTAAGTGTTGAACCTTTCGGGCCGGGCTTGTTTGTTTGCAAAGGCCCCGGCCAGTGTC
AACGTCAGGAGCCGGATCTGCAATGTAGGGGCTGGTGGACCTGCCCCAGCAGCTGGT

Alignment

ORF - retro_mputfur_1016 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.86 %
• Parental protein coverage: 62.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PALQLACIYSALILHDDEVTVTEDKINALLKAAGVNVEPFWPGL-IAK-ALANVNIGSLISNVGAGGPTP
          P...LACIY.AL.L..DEVTVTEDKINAL.KAAGV.VEPF.PGL...K.A.A.VN..S.I.NVGAGGP.P
Retrocopy PFSVLACIYVALSLLHDEVTVTEDKINALIKAAGVSVEPFGPGLFVCK>APASVNVRSRICNVGAGGPAP

Parental  AGG
          A.G
Retrocopy AAG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1016 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1016 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 54 retrocopies.

Species	Parental gene accession	Retrocopies number
Latimeria chalumnae	ENSLACG00000012630	1 retrocopy	retro_lcha_7,
Macropus eugenii	ENSMEUG00000015277	6 retrocopies	retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Macropus eugenii	ENSMEUG00000015282	2 retrocopies	retro_meug_207, retro_meug_45,
Monodelphis domestica	ENSMODG00000009209	1 retrocopy	retro_mdom_1022,
Monodelphis domestica	ENSMODG00000009218	4 retrocopies	retro_mdom_1168, retro_mdom_2001, retro_mdom_385, retro_mdom_50,
Mustela putorius furo	ENSMPUG00000000204	13 retrocopies	retro_mputfur_1018, retro_mputfur_113, retro_mputfur_122, retro_mputfur_1265, retro_mputfur_129, retro_mputfur_1334, retro_mputfur_1450, retro_mputfur_1598, retro_mputfur_1613, retro_mputfur_304, retro_mputfur_628, retro_mputfur_635, retro_mputfur_709,
Mustela putorius furo	ENSMPUG00000017096	2 retrocopies	retro_mputfur_1016 , retro_mputfur_266,
Oryctolagus cuniculus	ENSOCUG00000015087	8 retrocopies	retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Ochotona princeps	ENSOPRG00000001163	11 retrocopies	retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Sarcophilus harrisii	ENSSHAG00000014818	6 retrocopies	retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,