RetrogeneDB - Parental gene ENSFCAG00000002165 details

                            
>ENSFCAG00000002165
ATGGTGGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCCATCAACTCTAGGCTCCAACTCGTTATGAAAAGTGGGAAGTA

CGTGTTGGGGTACAAGCAGACTCTGAAAATGATCAGACATGGCAAAGCGAAACTGGTCATCCTCGCCAACAACTGCCCAG

CCTTGAGGAAGTCTGAAATAGAATACTATGCCATGTTGGCCAAAACTGGTGTCCATCACTACAGCGGCAATAATATTGAA

TTGGGCACAGCGTGTGGGAAATACTACAGAGTGTGCACACTGGCTATTATTGATCCAGGTGATTCTGATATCATTCGAAG

CATGCCAGAACAGACTGGTGAAAAGTAA

Library	Parental gene expression (RPM)
SRP017611_brain	74 .03 RPM
SRP017611_kidney	230 .75 RPM
SRP017611_liver	118 .28 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000016047	ortholog_many2many	2 retrogenes	retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca	ENSAMEG00000000605	ortholog_one2many	18 retrogenes	retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus	ENSBTAG00000016278	possible_ortholog	2 retrogenes	retro_btau_34, retro_btau_992,
Callithrix jacchus	ENSCJAG00000015549	possible_ortholog	4 retrogenes	retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Cavia porcellus	ENSCPOG00000026030	possible_ortholog	4 retrogenes	retro_cpor_1287, retro_cpor_1325, retro_cpor_505, retro_cpor_764,
Dasypus novemcinctus	ENSDNOG00000013828	possible_ortholog	12 retrogenes	retro_dnov_1331, retro_dnov_1754, retro_dnov_1883, retro_dnov_2094, retro_dnov_2208, retro_dnov_2455, retro_dnov_2484, retro_dnov_2513, retro_dnov_2670, retro_dnov_293, retro_dnov_334, retro_dnov_415,
Dipodomys ordii	ENSDORG00000012383	possible_ortholog	10 retrogenes	retro_dord_111, retro_dord_204, retro_dord_361, retro_dord_407, retro_dord_49, retro_dord_69, retro_dord_710, retro_dord_736, retro_dord_83, retro_dord_97,
Equus caballus	ENSECAG00000021705	possible_ortholog	7 retrogenes	retro_ecab_1094, retro_ecab_227, retro_ecab_406, retro_ecab_508, retro_ecab_599, retro_ecab_63, retro_ecab_945,
Erinaceus europaeus	ENSEEUG00000000964	possible_ortholog	9 retrogenes	retro_eeur_137, retro_eeur_214, retro_eeur_237, retro_eeur_355, retro_eeur_432, retro_eeur_59, retro_eeur_614, retro_eeur_69, retro_eeur_83,
Homo sapiens	ENSG00000156482	possible_ortholog	9 retrogenes	retro_hsap_1104, retro_hsap_1947, retro_hsap_2229, retro_hsap_2767, retro_hsap_3509, retro_hsap_3959, retro_hsap_4000, retro_hsap_4652, retro_hsap_475,
Gorilla gorilla	ENSGGOG00000005502	possible_ortholog	9 retrogenes	retro_ggor_1416, retro_ggor_1663, retro_ggor_178, retro_ggor_1925, retro_ggor_2661, retro_ggor_2886, retro_ggor_3073, retro_ggor_46, retro_ggor_866,
Loxodonta africana	ENSLAFG00000002077	possible_ortholog	2 retrogenes	retro_lafr_122, retro_lafr_882,
Microcebus murinus	ENSMICG00000004620	possible_ortholog	3 retrogenes	retro_mmur_258, retro_mmur_644, retro_mmur_693,
Myotis lucifugus	ENSMLUG00000003637	possible_ortholog	11 retrogenes	retro_mluc_1425, retro_mluc_2001, retro_mluc_2274, retro_mluc_2295, retro_mluc_2409, retro_mluc_409, retro_mluc_583, retro_mluc_639, retro_mluc_827, retro_mluc_838, retro_mluc_894,
Macaca mulatta	ENSMMUG00000020073	possible_ortholog	12 retrogenes	retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Monodelphis domestica	ENSMODG00000006804	possible_ortholog	1 retrogene	retro_mdom_664,
Mus musculus	ENSMUSG00000058600	possible_ortholog	21 retrogenes	retro_mmus_1048, retro_mmus_1102, retro_mmus_1276, retro_mmus_1434, retro_mmus_1439, retro_mmus_1586, retro_mmus_2059, retro_mmus_2273, retro_mmus_2728, retro_mmus_2828, retro_mmus_3179, retro_mmus_3286, retro_mmus_342, retro_mmus_3465, retro_mmus_3573, retro_mmus_3583, retro_mmus_3681, retro_mmus_3691, retro_mmus_569, retro_mmus_789, retro_mmus_892,
Oryctolagus cuniculus	ENSOCUG00000017386	possible_ortholog	4 retrogenes	retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Ochotona princeps	ENSOPRG00000007644	possible_ortholog	3 retrogenes	retro_opri_1087, retro_opri_662, retro_opri_954,
Pongo abelii	ENSPPYG00000018774	possible_ortholog	4 retrogenes	retro_pabe_1605, retro_pabe_178, retro_pabe_2846, retro_pabe_8,
Pan troglodytes	ENSPTRG00000020454	possible_ortholog	10 retrogenes	retro_ptro_1146, retro_ptro_1302, retro_ptro_1575, retro_ptro_1874, retro_ptro_2334, retro_ptro_2380, retro_ptro_2688, retro_ptro_3091, retro_ptro_356, retro_ptro_693,
Pteropus vampyrus	ENSPVAG00000014461	possible_ortholog	9 retrogenes	retro_pvam_1079, retro_pvam_1090, retro_pvam_1099, retro_pvam_161, retro_pvam_276, retro_pvam_279, retro_pvam_407, retro_pvam_506, retro_pvam_561,
Rattus norvegicus	ENSRNOG00000005975	possible_ortholog	19 retrogenes	retro_rnor_1, retro_rnor_1038, retro_rnor_1631, retro_rnor_1812, retro_rnor_1830, retro_rnor_1876, retro_rnor_1893, retro_rnor_1946, retro_rnor_1975, retro_rnor_2211, retro_rnor_2598, retro_rnor_2636, retro_rnor_2666, retro_rnor_2736, retro_rnor_739, retro_rnor_745, retro_rnor_753, retro_rnor_761, retro_rnor_940,
Sus scrofa	ENSSSCG00000006081	possible_ortholog	6 retrogenes	retro_sscr_100, retro_sscr_1211, retro_sscr_778, retro_sscr_782, retro_sscr_876, retro_sscr_963,
Tursiops truncatus	ENSTTRG00000016058	ortholog_one2many	5 retrogenes	retro_ttru_167, retro_ttru_1871, retro_ttru_1908, retro_ttru_1941, retro_ttru_509,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_45	78.38	96.52	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_49	70.00	95.65	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_323	73.50	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_754	88.14	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_1261	63.79	99.13	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_fcat_1391	75.00	61.74	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_fcat_1473	72.45	84.35	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_fcat_1689	75.44	99.13	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_fcat_1872	75.21	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000002165 retrocopies

Parental gene:	ENSFCAG00000002165
Aliases:	None
Description:	None
Organism:	*Cat (Felis catus)*
Coordinates:	F2:43779674..43783419(-)

Parental gene:

ENSFCAG00000002165