Parental gene:

RPL30, ENSSSCG00000006081

Aliases:None
Description:ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]
Organism:Pig (Sus scrofa)
Coordinates:4:41705580..41709618(+)


>ENSSSCG00000006081
ATGGTGGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCAATCAACTCTCGGCTCCAGCTGGTTATGAAAAGTGGAAAGTA
CGTGCTGGGGTACAAGCAGACTCTGAAAATGATCAGACAAGGCAAAGCGAAACTGGTCATCCTCGCCAACAACTGCCCAG
CCTTGAGGAAATCTGAAATAGAATATTATGCCATGTTGGCCAAAACTGGTGTCCATCACTACAGTGGAAATAATATTGAA
TTGGGCACAGCATGTGGAAAATACTACAGAGTATGCACACTGGCTATCATTGATCCAGGTGATTCTGATATCATTAGAAG
CATGCCAGAACAGACTGGTGAAAAGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 253 .65 RPM
SRP014902_testis 430 .85 RPM
SRP018288_heart 290 .46 RPM
SRP018288_kidney 324 .48 RPM
SRP018288_liver 330 .37 RPM
SRP018288_lung 87 .98 RPM
SRP018856_adipose 1248 .10 RPM
SRP035408_brain 97 .38 RPM
SRP035408_liver 85 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016047 ortholog_one2many 2 retrogenes
retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca ENSAMEG00000000605 possible_ortholog 18 retrogenes
retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus ENSBTAG00000016278 possible_ortholog 2 retrogenes
retro_btau_34, retro_btau_992,
Callithrix jacchus ENSCJAG00000015549 possible_ortholog 4 retrogenes
retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Felis catus ENSFCAG00000002165 possible_ortholog 9 retrogenes
retro_fcat_1261, retro_fcat_1391, retro_fcat_1473, retro_fcat_1689, retro_fcat_1872, retro_fcat_323, retro_fcat_45, retro_fcat_49, retro_fcat_754,
Gorilla gorilla ENSGGOG00000005502 ortholog_one2one 9 retrogenes
retro_ggor_1416, retro_ggor_1663, retro_ggor_178, retro_ggor_1925, retro_ggor_2661, retro_ggor_2886, retro_ggor_3073, retro_ggor_46, retro_ggor_866,
Loxodonta africana ENSLAFG00000002077 ortholog_one2one 2 retrogenes
retro_lafr_122, retro_lafr_882,
Microcebus murinus ENSMICG00000004620 possible_ortholog 3 retrogenes
retro_mmur_258, retro_mmur_644, retro_mmur_693,
Macaca mulatta ENSMMUG00000020073 possible_ortholog 12 retrogenes
retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Mus musculus ENSMUSG00000058600 ortholog_one2one 21 retrogenes
retro_mmus_1048, retro_mmus_1102, retro_mmus_1276, retro_mmus_1434, retro_mmus_1439, retro_mmus_1586, retro_mmus_2059, retro_mmus_2273, retro_mmus_2728, retro_mmus_2828, retro_mmus_3179, retro_mmus_3286, retro_mmus_342, retro_mmus_3465, retro_mmus_3573, retro_mmus_3583, retro_mmus_3681, retro_mmus_3691, retro_mmus_569, retro_mmus_789, retro_mmus_892,
Oryctolagus cuniculus ENSOCUG00000017386 ortholog_one2many 4 retrogenes
retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Pongo abelii ENSPPYG00000018774 ortholog_one2one 4 retrogenes
retro_pabe_1605, retro_pabe_178, retro_pabe_2846, retro_pabe_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_100 60.98 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_778 81.40 73.91
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_sscr_782 70.51 66.96
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_sscr_876 75.34 62.61
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_sscr_963 76.47 100.00
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_sscr_1211 78.35 83.48
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000006081 retrocopies