RetrogeneDB - Parental gene ENSDNOG00000013828 details

                            
>ENSDNOG00000013828
ATGGTGGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAACTTGTTATGAAAAGTGGAAAGTA

CGTGCTGGGATACAAGCAGACTCTGAAGATGATCAGGCAAGGCAAAGCGAAACTAGTGATCCTCGCCAACAACTGTCCAG

CTTTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCCAAAACTGGTGTTCATCACTACAGTGGCAATAATATTGAA

TTGGGCACAGCATGCGGAAAATACTACAGAGTATGTACACTGGCTATCATTGATCCAGGTGATTCTGATATCATTAGAAG

CATGCCAGAACAGACTGGTGAAAAGTAA

Library	Parental gene expression (RPM)
SRP012922_ascending_colon	222 .47 RPM
SRP012922_cerebellum	134 .99 RPM
SRP012922_heart	171 .24 RPM
SRP012922_kidney	308 .57 RPM
SRP012922_liver	175 .86 RPM
SRP012922_lung	422 .89 RPM
SRP012922_quadricep_muscle	214 .97 RPM
SRP012922_spleen	422 .02 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000016047	ortholog_one2many	2 retrogenes	retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca	ENSAMEG00000000605	possible_ortholog	18 retrogenes	retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus	ENSBTAG00000016278	possible_ortholog	2 retrogenes	retro_btau_34, retro_btau_992,
Callithrix jacchus	ENSCJAG00000015549	ortholog_one2many	4 retrogenes	retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Cavia porcellus	ENSCPOG00000026030	ortholog_one2one	4 retrogenes	retro_cpor_1287, retro_cpor_1325, retro_cpor_505, retro_cpor_764,
Dipodomys ordii	ENSDORG00000012383	ortholog_one2one	10 retrogenes	retro_dord_111, retro_dord_204, retro_dord_361, retro_dord_407, retro_dord_49, retro_dord_69, retro_dord_710, retro_dord_736, retro_dord_83, retro_dord_97,
Equus caballus	ENSECAG00000021705	ortholog_one2one	7 retrogenes	retro_ecab_1094, retro_ecab_227, retro_ecab_406, retro_ecab_508, retro_ecab_599, retro_ecab_63, retro_ecab_945,
Erinaceus europaeus	ENSEEUG00000000964	ortholog_one2one	9 retrogenes	retro_eeur_137, retro_eeur_214, retro_eeur_237, retro_eeur_355, retro_eeur_432, retro_eeur_59, retro_eeur_614, retro_eeur_69, retro_eeur_83,
Felis catus	ENSFCAG00000002165	possible_ortholog	9 retrogenes	retro_fcat_1261, retro_fcat_1391, retro_fcat_1473, retro_fcat_1689, retro_fcat_1872, retro_fcat_323, retro_fcat_45, retro_fcat_49, retro_fcat_754,
Homo sapiens	ENSG00000156482	ortholog_one2one	9 retrogenes	retro_hsap_1104, retro_hsap_1947, retro_hsap_2229, retro_hsap_2767, retro_hsap_3509, retro_hsap_3959, retro_hsap_4000, retro_hsap_4652, retro_hsap_475,
Loxodonta africana	ENSLAFG00000002077	possible_ortholog	2 retrogenes	retro_lafr_122, retro_lafr_882,
Microcebus murinus	ENSMICG00000004620	ortholog_one2one	3 retrogenes	retro_mmur_258, retro_mmur_644, retro_mmur_693,
Myotis lucifugus	ENSMLUG00000003637	ortholog_one2one	11 retrogenes	retro_mluc_1425, retro_mluc_2001, retro_mluc_2274, retro_mluc_2295, retro_mluc_2409, retro_mluc_409, retro_mluc_583, retro_mluc_639, retro_mluc_827, retro_mluc_838, retro_mluc_894,
Macaca mulatta	ENSMMUG00000020073	possible_ortholog	12 retrogenes	retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Oryctolagus cuniculus	ENSOCUG00000017386	possible_ortholog	4 retrogenes	retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Pan troglodytes	ENSPTRG00000020454	ortholog_one2one	10 retrogenes	retro_ptro_1146, retro_ptro_1302, retro_ptro_1575, retro_ptro_1874, retro_ptro_2334, retro_ptro_2380, retro_ptro_2688, retro_ptro_3091, retro_ptro_356, retro_ptro_693,
Pteropus vampyrus	ENSPVAG00000014461	ortholog_one2one	9 retrogenes	retro_pvam_1079, retro_pvam_1090, retro_pvam_1099, retro_pvam_161, retro_pvam_276, retro_pvam_279, retro_pvam_407, retro_pvam_506, retro_pvam_561,
Rattus norvegicus	ENSRNOG00000005975	ortholog_one2one	19 retrogenes	retro_rnor_1, retro_rnor_1038, retro_rnor_1631, retro_rnor_1812, retro_rnor_1830, retro_rnor_1876, retro_rnor_1893, retro_rnor_1946, retro_rnor_1975, retro_rnor_2211, retro_rnor_2598, retro_rnor_2636, retro_rnor_2666, retro_rnor_2736, retro_rnor_739, retro_rnor_745, retro_rnor_753, retro_rnor_761, retro_rnor_940,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_dnov_293	70.53	82.61	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_dnov_334	81.58	66.09	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_dnov_415	88.14	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_dnov_1331	79.35	78.26	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_dnov_1754	89.47	64.35	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_dnov_1883	71.11	77.39	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_dnov_2094	81.20	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_dnov_2208	81.18	73.04	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_dnov_2455	87.72	99.13	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_dnov_2484	90.52	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_dnov_2513	78.45	100.00	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_dnov_2670	57.55	90.43	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSDNOG00000013828 retrocopies

Parental gene:	RPL30, ENSDNOG00000013828
Aliases:	None
Description:	ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]
Organism:	*Armadillo (Dasypus novemcinctus)*
Coordinates:	GeneScaffold_2958:176612..179782(-)

Parental gene:

RPL30, ENSDNOG00000013828