Parental gene:

RPS4, ENSECAG00000010852

Aliases:None
Description:40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P55832]
Organism:Horse (Equus caballus)
Coordinates:X:53887984..53892570(-)


>ENSECAG00000010852
GCTCGTGGTCCCAAGAAACATCTGAAGCGTGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGAGTGTTTGC
TCCTCGACCATCTACCGGTCCCCATAAGCTGAGAGAATGTCTCCCCCTTATCATTTTCCTAAGGAACAGACTTAAGTATG
CCCTAACAGGAGATGAAGTAAAGAAGATTTGCATGCAGCGGTTCATTAAGATTGACGGCAAGGTCCGAACTGATATAACC
TACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTCCGTCTGATCTATGACACCAAGGGTCG
CTTTGCCGTTCATCGTATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAG
GAATCCCTCATCTGGTGACCCATGATGCTCGGACCATCCGCTACCCTGATCCTCTCATCAAGGTCAATGACACCATTCAG
ATTGATTTGGAGACTGGCAAGATTACTGATTTTATCAAGTTTGACACTGGTAACCTGTGTATGGTGACCGGAGGTGCTAA
CCTGGGAAGAATTGGAGTGATCACCAACAGAGAGAGACACCCTGGTTCTTTTGATGTAGTTCATGTGAAAGATGCCAATG
GCAACAGCTTTGCCACCCGGCTCTCCAACATCTTTGTTATTGGCAAAGGTAACAAGCCATGGATTTCTCTTCCCCGTGGA
AAGGGCATCCGCCTCACCATTGCTGAAGAGAGAGACAAGAGACTGGCAGCCAAACAGAGCAGTGGGTGA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 940 .82 RPM
SRP021940_cerebellum 259 .56 RPM
SRP021940_embryo 690 .87 RPM
SRP021940_placental_villous 301 .03 RPM
SRP021940_synovial_membrane 526 .26 RPM
SRP021940_testis 160 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000005805 possible_ortholog 14 retrogenes
Bos taurus ENSBTAG00000018800 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000017151 possible_ortholog 2 retrogenes
Callithrix jacchus ENSCJAG00000004192 possible_ortholog 2 retrogenes
Cavia porcellus ENSCPOG00000006337 ortholog_one2one 3 retrogenes
Dipodomys ordii ENSDORG00000008571 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000012041 possible_ortholog 11 retrogenes
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
Homo sapiens ENSG00000198034 possible_ortholog 19 retrogenes
Gorilla gorilla ENSGGOG00000023079 possible_ortholog 18 retrogenes
Loxodonta africana ENSLAFG00000002654 ortholog_one2one 4 retrogenes
Macropus eugenii ENSMEUG00000007969 possible_ortholog 16 retrogenes
Meleagris gallopavo ENSMGAG00000009671 ortholog_many2many 1 retrogene
Microcebus murinus ENSMICG00000016606 possible_ortholog 58 retrogenes
Myotis lucifugus ENSMLUG00000011685 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000003295 possible_ortholog 7 retrogenes
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000005294 ortholog_one2one 11 retrogenes
Mus musculus ENSMUSG00000031320 possible_ortholog 13 retrogenes
Nomascus leucogenys ENSNLEG00000018121 possible_ortholog 25 retrogenes
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000000761 possible_ortholog 3 retrogenes
Pongo abelii ENSPPYG00000020462 possible_ortholog 24 retrogenes
Pan troglodytes ENSPTRG00000022025 possible_ortholog 9 retrogenes
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000012882 possible_ortholog 21 retrogenes
Rattus norvegicus ENSRNOG00000003201 ortholog_one2one 1 retrogene
Sorex araneus ENSSARG00000010806 possible_ortholog 6 retrogenes
Sus scrofa ENSSSCG00000012405 possible_ortholog 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000028692 ortholog_one2one 8 retrogenes
Tupaia belangeri ENSTBEG00000002918 possible_ortholog 20 retrogenes
Tarsius syrichta ENSTSYG00000003137 possible_ortholog 16 retrogenes
Tursiops truncatus ENSTTRG00000006164 possible_ortholog 13 retrogenes
Vicugna pacos ENSVPAG00000010952 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_34 92.37 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ecab_435 73.73 96.56
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ecab_443 81.03 73.66
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ecab_614 72.08 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ecab_757 77.00 75.95
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_ecab_850 76.77 58.40
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSECAG00000010852 retrocopies