Parental gene:

RPS4Y1, ENSMMUG00000003295

Aliases:RPS4Y1, RPS4X
Description:40S ribosomal protein S4, X isoform [Source:RefSeq peptide;Acc:NP_001252551]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:X:71200610..71205747(-)


>ENSMMUG00000003295
ATGGCTCGTGGTCCCAAGAAGCATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACCGGTGTGTT
TGCTCCTCGTCCATCCACCGGTCCCCACAAGTTGAGAGAGTGTCTCCCCCTCATCATCTTCCTAAGGAACAGACTTAAGT
ATGCCCTGACAGGAGATGAAGTAAAGAAGATTTGCATGCAGCGGTTCATTAAGATCGATGGCAAGGTCCGAACTGATATA
ACCTACCCTGCTGGATTCATGGATGTCATCAGCATTGACAAGACGGGAGAGAATTTCCGTCTGATCTATGACACCAAGGG
TCGCTTTGCTGTACATCGTATTACACCTGAGGAGGCCAAGTACAAGTTATGCAAAGTGAGAAAGATCTTTGTGGGCACAA
AAGGAATCCCTCATCTGGTGACTCATGATGCCCGCACCATCCGCTACCCCGATCCCCTCATCAAGGTGAATGATACCATT
CAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAGTTCGACACTGGTAACCTGTGTATGGTGACTGGAGGTGC
TAACCTGGGAAGAATTGGTGTGATCACCAACAGAGAGAGGCATCCTGGATCTTTTGACGTGGTTCACGTGAAAGATGCCA
ATGGCAACAGCTTTGCCACTCGACTTTCCAACATTTTTGTTATTGGCAAGGGCAACAAACCATGGATTTCTCTTCCCCGA
GGAAAGGGTATCCGCCTCACCATTGCTGAAGAGAGAGACAAAAGACTGGCGGCCAAACAGAGCAGTGGGTGA

Library Parental gene expression (RPM)
SRP007412_brain 51 .10 RPM
SRP007412_brain_prefrontal_cortex 129 .31 RPM
SRP007412_cerebellum 36 .23 RPM
SRP007412_heart 82 .85 RPM
SRP007412_kidney 77 .70 RPM
SRP007412_liver 92 .82 RPM
SRP007412_testis 10 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2many 1 retrogene
retro_acar_82,
Bos taurus ENSBTAG00000018800 ortholog_one2one 5 retrogenes
retro_btau_119, retro_btau_125, retro_btau_146, retro_btau_33, retro_btau_76,
Canis familiaris ENSCAFG00000017151 possible_ortholog 2 retrogenes
retro_cfam_165, retro_cfam_194,
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Felis catus ENSFCAG00000012041 ortholog_one2one 11 retrogenes
retro_fcat_1155, retro_fcat_1498, retro_fcat_1562, retro_fcat_1751, retro_fcat_1773, retro_fcat_2024, retro_fcat_229, retro_fcat_290, retro_fcat_454, retro_fcat_563, retro_fcat_766,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Loxodonta africana ENSLAFG00000002654 possible_ortholog 4 retrogenes
retro_lafr_1007, retro_lafr_1081, retro_lafr_1238, retro_lafr_208,
Macropus eugenii ENSMEUG00000007969 possible_ortholog 16 retrogenes
retro_meug_131, retro_meug_141, retro_meug_1644, retro_meug_1732, retro_meug_1814, retro_meug_194, retro_meug_2098, retro_meug_2121, retro_meug_228, retro_meug_562, retro_meug_628, retro_meug_673, retro_meug_843, retro_meug_872, retro_meug_972, retro_meug_999,
Meleagris gallopavo ENSMGAG00000009671 ortholog_many2many 1 retrogene
retro_mgal_3,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Procavia capensis ENSPCAG00000000761 possible_ortholog 3 retrogenes
retro_pcap_334, retro_pcap_35, retro_pcap_360,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Pteropus vampyrus ENSPVAG00000012882 possible_ortholog 21 retrogenes
retro_pvam_1021, retro_pvam_1082, retro_pvam_1158, retro_pvam_1264, retro_pvam_1298, retro_pvam_1312, retro_pvam_1327, retro_pvam_1364, retro_pvam_1419, retro_pvam_177, retro_pvam_191, retro_pvam_214, retro_pvam_219, retro_pvam_335, retro_pvam_473, retro_pvam_628, retro_pvam_714, retro_pvam_809, retro_pvam_835, retro_pvam_921, retro_pvam_930,
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
retro_rnor_135,
Ictidomys tridecemlineatus ENSSTOG00000028692 possible_ortholog 8 retrogenes
retro_itri_1179, retro_itri_1607, retro_itri_291, retro_itri_306, retro_itri_368, retro_itri_495, retro_itri_738, retro_itri_985,
Tupaia belangeri ENSTBEG00000002918 ortholog_one2one 20 retrogenes
retro_tbel_1108, retro_tbel_1367, retro_tbel_1465, retro_tbel_1798, retro_tbel_2241, retro_tbel_2659, retro_tbel_2711, retro_tbel_2715, retro_tbel_2722, retro_tbel_2743, retro_tbel_2944, retro_tbel_310, retro_tbel_3172, retro_tbel_3232, retro_tbel_4263, retro_tbel_4569, retro_tbel_4572, retro_tbel_4648, retro_tbel_511, retro_tbel_877,
Vicugna pacos ENSVPAG00000010952 ortholog_one2one 4 retrogenes
retro_vpac_244, retro_vpac_460, retro_vpac_604, retro_vpac_653,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_43 78.66 90.87
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_mmul_97 98.48 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_mmul_1243 84.26 78.78
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_mmul_1589 75.79 95.06
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_mmul_1895 76.51 56.27
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_mmul_1999 83.89 68.44
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_mmul_2338 81.37 76.81
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMMUG00000003295 retrocopies