Parental gene:

ENSAMEG00000005805

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193289.1:362928..367101(-)


>ENSAMEG00000005805
ATTCTCCTTCAGGCTCGTGGTCCCAAGAAGCATCTGAAGCGTGTAGCAGCTCCAAAGCATTGGATGCTGGATAAACTGAC
CGGTGTGTTTGCTCCTCGCCCATCTACTGGTCCCCATAAGCTGAGAGAATGTCTCCCTCTCATCATTTTCCTAAGGAACA
GACTTAAGTATGCCCTAACAGGAGATGAAGTAAAGAAAATATGTATGCAGCGTTTTATTAAGATTGATGGCAAGGTCCGA
ACTGATATCACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGGGAGAATTTCCGCCTGATCTATGA
CACCAAGGGTCGCTTTGCTGTTCATCGGATTACACCTGAGGAGGCCAAGTATAAGTTGTGCAAAGTCAGAAAGATCTTTG
TGGGGACAAAAGGAATCCCTCATCTGGTGACTCATGATGCTCGCACCATCCGCTATCCTGATCCCCTCATCAAGGTGAAT
GACACCATTCAGATCGATTTGGAGACTGGAAAGATTACTGATTTCATCAAGTTCGATACTGGTAACCTGTGTATGGTGAC
TGGGGGTGCTAACCTGGGAAGAATTGGTGTGATCACCAATAGAGAGAGACACCCTGGTTCGTTCGATGTGGTTCACGTGA
AGGATGCCAACGGCAATAGCTTTGCCACCCGGCTCTCCAACATTTTTGTTATCGGCAAAGGCAACAAACCATGGATTTCT
CTTCCCCGGGGAAAGGGTATCCGCCTCACCATTGCTGAAGAGAGAGACAAGAGACTGCAGCCAAACAGAGCAGCGGGTAA
AATGGTC

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2many 1 retrogene
retro_acar_82,
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Gorilla gorilla ENSGGOG00000023079 ortholog_one2one 18 retrogenes
retro_ggor_1278, retro_ggor_1319, retro_ggor_1354, retro_ggor_1367, retro_ggor_1478, retro_ggor_1479, retro_ggor_1517, retro_ggor_1520, retro_ggor_1689, retro_ggor_223, retro_ggor_2676, retro_ggor_2719, retro_ggor_572, retro_ggor_711, retro_ggor_844, retro_ggor_894, retro_ggor_895, retro_ggor_939,
Loxodonta africana ENSLAFG00000002654 possible_ortholog 4 retrogenes
retro_lafr_1007, retro_lafr_1081, retro_lafr_1238, retro_lafr_208,
Macropus eugenii ENSMEUG00000007969 possible_ortholog 16 retrogenes
retro_meug_131, retro_meug_141, retro_meug_1644, retro_meug_1732, retro_meug_1814, retro_meug_194, retro_meug_2098, retro_meug_2121, retro_meug_228, retro_meug_562, retro_meug_628, retro_meug_673, retro_meug_843, retro_meug_872, retro_meug_972, retro_meug_999,
Meleagris gallopavo ENSMGAG00000009671 ortholog_many2many 1 retrogene
retro_mgal_3,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Procavia capensis ENSPCAG00000000761 possible_ortholog 3 retrogenes
retro_pcap_334, retro_pcap_35, retro_pcap_360,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Pteropus vampyrus ENSPVAG00000012882 possible_ortholog 21 retrogenes
retro_pvam_1021, retro_pvam_1082, retro_pvam_1158, retro_pvam_1264, retro_pvam_1298, retro_pvam_1312, retro_pvam_1327, retro_pvam_1364, retro_pvam_1419, retro_pvam_177, retro_pvam_191, retro_pvam_214, retro_pvam_219, retro_pvam_335, retro_pvam_473, retro_pvam_628, retro_pvam_714, retro_pvam_809, retro_pvam_835, retro_pvam_921, retro_pvam_930,
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
retro_rnor_135,
Ictidomys tridecemlineatus ENSSTOG00000028692 possible_ortholog 8 retrogenes
retro_itri_1179, retro_itri_1607, retro_itri_291, retro_itri_306, retro_itri_368, retro_itri_495, retro_itri_738, retro_itri_985,
Tursiops truncatus ENSTTRG00000006164 ortholog_one2one 13 retrogenes
retro_ttru_104, retro_ttru_1104, retro_ttru_1129, retro_ttru_1748, retro_ttru_260, retro_ttru_465, retro_ttru_470, retro_ttru_512, retro_ttru_565, retro_ttru_618, retro_ttru_631, retro_ttru_728, retro_ttru_734,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_195 54.35 50.93
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2. retro_amel_259 76.47 99.63
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3. retro_amel_327 76.92 52.42
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4. retro_amel_576 78.73 82.16
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5. retro_amel_767 76.22 52.42
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6. retro_amel_869 73.91 50.93
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7. retro_amel_968 84.00 54.65
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8. retro_amel_971 64.56 75.46
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9. retro_amel_1003 76.37 66.91
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10. retro_amel_1128 77.65 97.40
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11. retro_amel_1296 74.07 50.19
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12. retro_amel_1381 83.60 69.52
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13. retro_amel_1695 69.57 59.11
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14. retro_amel_1869 78.22 82.16
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Download FASTA sequences of all ENSAMEG00000005805 retrocopies