Parental gene:

RPS4X, ENSTTRG00000006164

Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3362:5405..11195(-)


>ENSTTRG00000006164
ATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCTCCTCGTCCATCTACCGGTCCTCACAAGCTGAGGGAATGTCTCCCCCTAATTATTTTCCTAAGGAACAGACTTAAAT
ATGCCCTAACAGGAGATGAAGTAAAGAAGATCTGCATGCAGCGTTTCATTAAGATTGATGGCAAGGTCCGCACCGATATA
ACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTTCGTCTGATCTATGACACCAAGGG
TCGCTTTGCTGTTCATCGTATTACACCTGAGGAGGCCAAGTATAAGTTATGCAAAGTGAGAAAGATCTTTGTGGGGACAA
AAGGAATCCCTCATCTGGTGACCCATGATGCTCGCACCATCCGCTACCCTGATCCCCTCATCAAGGTGAATGACACCATT
CAGATTGATTTGGAGACTGGCAAGATTACTGATTTCATCAAATTTGACACTGGTAACCTGTGCATGGTGACTGGAGGTGC
TAACCTGGGAAGAATTGGTGTGATCACTAACCGGGAGAGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2one 1 retrogene
retro_acar_82,
Ailuropoda melanoleuca ENSAMEG00000005805 ortholog_one2one 14 retrogenes
retro_amel_1003, retro_amel_1128, retro_amel_1296, retro_amel_1381, retro_amel_1695, retro_amel_1869, retro_amel_195, retro_amel_259, retro_amel_327, retro_amel_576, retro_amel_767, retro_amel_869, retro_amel_968, retro_amel_971,
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Gorilla gorilla ENSGGOG00000023079 ortholog_one2one 18 retrogenes
retro_ggor_1278, retro_ggor_1319, retro_ggor_1354, retro_ggor_1367, retro_ggor_1478, retro_ggor_1479, retro_ggor_1517, retro_ggor_1520, retro_ggor_1689, retro_ggor_223, retro_ggor_2676, retro_ggor_2719, retro_ggor_572, retro_ggor_711, retro_ggor_844, retro_ggor_894, retro_ggor_895, retro_ggor_939,
Meleagris gallopavo ENSMGAG00000009671 ortholog_one2many 1 retrogene
retro_mgal_3,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
retro_rnor_135,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_104 89.74 58.50
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2. retro_ttru_260 76.00 86.50
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3. retro_ttru_465 93.64 86.50
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4. retro_ttru_470 65.10 73.50
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5. retro_ttru_512 90.79 76.00
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6. retro_ttru_565 95.95 86.50
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7. retro_ttru_618 82.04 82.50
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8. retro_ttru_631 83.82 86.50
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9. retro_ttru_728 98.27 86.50
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10. retro_ttru_734 68.57 86.00
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11. retro_ttru_1104 86.23 83.00
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12. retro_ttru_1129 82.47 77.00
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13. retro_ttru_1748 77.71 86.00
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Download FASTA sequences of all ENSTTRG00000006164 retrocopies