Parental gene:

ENSCAFG00000001728

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:12:11445518..11449714(+)


>ENSCAFG00000001728
ATGGCGGAGCAAGAGCAAAGAAAAAAGATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAGGCCCT
TAAAGCCACTCAAGCAAAGCAGGCGCTTTTGGACAAGAAGGAGCAGAATAAAGGAAAAAAGCTCAAGTTTAAGCGACTGG
AGTGGTTCCTTCATGATTCCTGGCGGCAGCAGCGTGACAGGGTGCGCCTCAGACGCCTGGAAGTGAAACCTCATGGCTTA
GAAGTGCCAGATAAACATTCCTTGGCCTTCATTGTACGCATCCAAAGGATTAATGGGGTGAGTTCACTGGTACAGAGGAC
CATTGCAAGGCTGCGCCTGAAGAAGATCTTCAGTGGTGTCTTTTTCAGAGTAACCCCCCAGACCATGAAGACACTGCGGA
TAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGGGAACTCATCTTGAAACGTGGACAAGCCAAG
GTCAAGAATAAAACCATCCCTTTGACGGACAACACAGTGATTGAGGAGCATCTGGGGAAGTATGGTGTTATTTGCTTGGA
AGACCTCATTCATGAAATTGCCTTTCCGGGAAAGAATTTCCAGGCCATCTCTGCGTTCTTACGTCCTTTCCACCTCTCAA
TGGCCCGACATGCTACCAAGAACAGAGTGGGCTTCCTCAAGGAGGTGGGCTTACCTGGCTATCGAGGTGAACGCATCAAT
CAGCTCATTCGGCAGCTGAATTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 11 .68 RPM
SRP017611_brain 13 .89 RPM
SRP017611_kidney 19 .94 RPM
SRP017611_liver 10 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2many 2 retrogenes
Bos taurus ENSBTAG00000018478 ortholog_one2many 2 retrogenes
Canis familiaris ENSCAFG00000008021 within_species_paralog 28 retrogenes
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2many 4 retrogenes
Cavia porcellus ENSCPOG00000021189 ortholog_many2many 2 retrogenes
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2many 1 retrogene
Equus caballus ENSECAG00000003113 ortholog_one2many 1 retrogene
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2many 1 retrogene
Echinops telfairi ENSETEG00000002419 ortholog_one2many 3 retrogenes
Felis catus ENSFCAG00000009707 ortholog_one2many 1 retrogene
Homo sapiens ENSG00000146223 ortholog_one2many 22 retrogenes
Gorilla gorilla ENSGGOG00000009958 ortholog_many2many 15 retrogenes
Macaca mulatta ENSMMUG00000021313 ortholog_many2many 1 retrogene
Monodelphis domestica ENSMODG00000019028 ortholog_one2many 1 retrogene
Mustela putorius furo ENSMPUG00000013296 ortholog_one2many 1 retrogene
Mus musculus ENSMUSG00000063888 ortholog_many2many 4 retrogenes
Nomascus leucogenys ENSNLEG00000004649 ortholog_one2many 21 retrogenes
Oryctolagus cuniculus ENSOCUG00000003844 ortholog_one2many 6 retrogenes
Otolemur garnettii ENSOGAG00000012671 ortholog_many2many 3 retrogenes
Pongo abelii ENSPPYG00000016619 ortholog_one2many 21 retrogenes
Pan troglodytes ENSPTRG00000018175 ortholog_one2many 23 retrogenes
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2many 3 retrogenes
Rattus norvegicus ENSRNOG00000016269 ortholog_many2many 1 retrogene
Sorex araneus ENSSARG00000005286 ortholog_one2many 2 retrogenes
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2many 1 retrogene
Sus scrofa ENSSSCG00000026472 ortholog_one2many 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000009841 ortholog_many2many 2 retrogenes
Tarsius syrichta ENSTSYG00000004848 ortholog_one2many 16 retrogenes
Tursiops truncatus ENSTTRG00000006971 ortholog_one2many 6 retrogenes
Vicugna pacos ENSVPAG00000008894 ortholog_one2many 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_330 77.78 75.71
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2. retro_cfam_1180 62.34 61.13
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3. retro_cfam_1464 73.05 56.68
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4. retro_cfam_1638 86.64 99.60
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Download FASTA sequences of all ENSCAFG00000001728 retrocopies