Parental gene:

RPL7L1, ENSTSYG00000004848

Aliases:None
Description:ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370]
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_2227:43190..48120(+)


>ENSTSYG00000004848
ATGGCGGAGGAAGGGCAAAGGAAAATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAAGCTCTCAA
AGCCACCCAGGCAAAGCAGGCGCTTTTGGCAAGGAAGGAGCAAAGAAAAGGAAAAGGGCTCAAGTTTAAGCGATTGGAAT
TGTTCCTGTATGATTCCTGGCGGCAGAAACGTGACAGTGTGCGTCTTAGAAGACTAGAAGTGAAACCTCATGCCTTGGAA
TTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCCAAAGGATTGATGGGGTGAGTTCGCTGGTGCAGAGAACCAT
TGCAAGACTTCACCTGAAGAAAATTTTCAGTGGTGTCTTTGTCAAAGTCACCCCCCAGCGCCTAAAAATGCTGCGTATTG
TAGAGACCTATGTGACCTGCGGATTTCCAAATCTGAAGTCCGTTCGGGAACTCATCTTGAAACGTGGACAAGCCAGGGTC
AAGAATAAGACCATTCCTCTGACAGACAACACAGTGATTGAGGAGCACCTGGGGAAGTTTGGTGTCATTTGCTTGGAAGA
CCTCATTCATGAAATTGCCTTCCCGGGAAAGCATTTCCAGGAGATCTCATGGTTCTTGCGCCCTTTCCAACTCTCAGTAG
CCCGTCATGCTACCAAAAATAGAGTAGGCTTCGTCAAGGAAATGGGTTCACCTGGCTATCGGGGTGAACGCATCAATCAG
CTAATCCGCCTGCTGAACTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 ortholog_one2one 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Gorilla gorilla ENSGGOG00000009958 possible_ortholog 15 retrogenes
retro_ggor_1009, retro_ggor_1013, retro_ggor_1253, retro_ggor_1261, retro_ggor_1904, retro_ggor_2099, retro_ggor_2108, retro_ggor_2113, retro_ggor_2162, retro_ggor_2282, retro_ggor_2457, retro_ggor_2524, retro_ggor_2591, retro_ggor_2659, retro_ggor_2973,
Macaca mulatta ENSMMUG00000021313 possible_ortholog 1 retrogene
retro_mmul_11,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 possible_ortholog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Otolemur garnettii ENSOGAG00000012671 possible_ortholog 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 possible_ortholog 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2one 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tarsius syrichta ENSTSYG00000006100 within_species_paralog 25 retrogenes
retro_tsyr_1149, retro_tsyr_1200, retro_tsyr_1293, retro_tsyr_1297, retro_tsyr_1403, retro_tsyr_1598, retro_tsyr_1633, retro_tsyr_1850, retro_tsyr_1891, retro_tsyr_191, retro_tsyr_2109, retro_tsyr_2130, retro_tsyr_344, retro_tsyr_421, retro_tsyr_433, retro_tsyr_521, retro_tsyr_589, retro_tsyr_601, retro_tsyr_651, retro_tsyr_724, retro_tsyr_779, retro_tsyr_877, retro_tsyr_930, retro_tsyr_953, retro_tsyr_992,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_357 87.95 99.59
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2. retro_tsyr_455 95.14 100.00
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3. retro_tsyr_469 68.72 77.64
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4. retro_tsyr_581 95.93 100.00
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5. retro_tsyr_606 87.85 100.00
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6. retro_tsyr_642 75.00 100.00
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7. retro_tsyr_703 72.47 100.00
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8. retro_tsyr_856 89.68 50.81
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9. retro_tsyr_1312 89.68 50.81
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10. retro_tsyr_1340 90.17 70.33
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11. retro_tsyr_1380 87.85 100.00
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12. retro_tsyr_1399 79.39 52.85
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13. retro_tsyr_1729 91.06 100.00
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14. retro_tsyr_1914 82.69 63.01
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15. retro_tsyr_1933 95.52 54.47
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16. retro_tsyr_2161 75.41 73.58
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Download FASTA sequences of all ENSTSYG00000004848 retrocopies