Parental gene:

RPL7L1, ENSGGOG00000009958

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:44141078..44149165(+)


>ENSGGOG00000009958
ATGGCGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAAGCCCTCAA
AGCCACCCAGGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAAT
CATTCCTACATGATTCCTGGCGGCAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAA
TTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGCATAAGGATTGATGGCGTGAGTTTACTGGTGCAGAG
AATCATTGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTTTTTGTAAAAGTCACCCCCCAGAATCTAAAAATGCTGT
GTATAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTCATTTTGAAACATGGACAAGCC
AAGGTCAAGAATAAGACCATTCCTCTGACAGACAACACAGTGATTGAGGAGCACCTGGGGAAGTTTGGCGTCATTTGCTT
GGAAGACCTCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGATCTCATGGTTCTTGCGCCCTTTCCACCTCT
CAGTGGCCCGTCATGCTACCAAAAATAGAGTGGGCTTCCTCAAGGAGATGGGCACACCTGGCTATCGGGGTGAACGCATC
AATCAGCTCATCCGTCAGCTGAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 37 .69 RPM
SRP007412_cerebellum 31 .64 RPM
SRP007412_heart 9 .07 RPM
SRP007412_kidney 48 .41 RPM
SRP007412_liver 36 .48 RPM
SRP007412_testis 33 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2many 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2many 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_many2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2many 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 possible_ortholog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2many 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2many 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2many 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2many 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2many 1 retrogene
retro_fcat_143,
Macaca mulatta ENSMMUG00000021313 ortholog_many2many 1 retrogene
retro_mmul_11,
Monodelphis domestica ENSMODG00000019028 ortholog_one2many 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2many 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 possible_ortholog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Oryctolagus cuniculus ENSOCUG00000003844 possible_ortholog 6 retrogenes
retro_ocun_1393, retro_ocun_1604, retro_ocun_1818, retro_ocun_278, retro_ocun_509, retro_ocun_598,
Otolemur garnettii ENSOGAG00000012671 possible_ortholog 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pongo abelii ENSPPYG00000016619 ortholog_one2many 21 retrogenes
retro_pabe_1064, retro_pabe_1069, retro_pabe_1315, retro_pabe_1341, retro_pabe_1370, retro_pabe_1379, retro_pabe_1457, retro_pabe_2078, retro_pabe_2154, retro_pabe_2354, retro_pabe_2527, retro_pabe_2543, retro_pabe_2598, retro_pabe_2609, retro_pabe_2644, retro_pabe_2988, retro_pabe_3053, retro_pabe_3259, retro_pabe_3410, retro_pabe_3714, retro_pabe_3753,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2many 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 possible_ortholog 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2many 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2many 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2many 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tarsius syrichta ENSTSYG00000004848 possible_ortholog 16 retrogenes
retro_tsyr_1312, retro_tsyr_1340, retro_tsyr_1380, retro_tsyr_1399, retro_tsyr_1729, retro_tsyr_1914, retro_tsyr_1933, retro_tsyr_2161, retro_tsyr_357, retro_tsyr_455, retro_tsyr_469, retro_tsyr_581, retro_tsyr_606, retro_tsyr_642, retro_tsyr_703, retro_tsyr_856,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2many 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2many 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_1009 81.71 100.00
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2. retro_ggor_1013 84.98 94.31
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3. retro_ggor_1253 86.90 68.29
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4. retro_ggor_1261 86.90 67.07
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5. retro_ggor_1904 87.85 100.00
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6. retro_ggor_2099 83.17 84.15
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7. retro_ggor_2108 91.06 100.00
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8. retro_ggor_2113 83.87 100.00
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9. retro_ggor_2162 84.83 58.94
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10. retro_ggor_2282 78.30 92.34
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11. retro_ggor_2457 87.04 100.00
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12. retro_ggor_2524 84.56 54.47
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13. retro_ggor_2591 82.66 99.19
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14. retro_ggor_2659 87.05 78.05
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15. retro_ggor_2973 87.45 100.00
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Download FASTA sequences of all ENSGGOG00000009958 retrocopies