Parental gene:

RPL7L1, ENSOCUG00000003844

Aliases:None
Description:ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:12:32409521..32416464(+)


>ENSOCUG00000003844
AGAAAGATGGCGGAAGAAGAGCAAAGAAAAAGGATTCCATTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTCTCA
AGCCCTCAAAGCCACACAGGCAAAGCAGGAGCTTTTGGCCAAGAAAATCAGGAAAAGAAAAGAATTCAGGTTTAAGCGAC
TGGAGTCCTTCGTGCACGATTCCTGGCGGCAGCGACGGGATGCAGTCCGGCTCCGACGACTGAAAGTGAAACCTCGTGCC
TTGGAAATGCCAGACAAGCATTCCTTGGCCTTTGTTGTACGGCTCCAAAGGATTAACGGGGTGAGTTCACTGGTGGAGAG
GACCATTGCAAGACTTCGCCTGAAGAAACTGTTCAGTGGCGTCTTTGTCCAGGTCACCCCCCAAAACCTAAAACTGCTGC
GGATAGTGGAACCTTACGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGGGAACTCATCCTGAAACGTGGGCAAGCA
AGGGTCAACGATAAGAGCATCCCTCTGACAGACAACACCGTGATTGAGGAGCACCTGGGGAGATTTGGTGTCATCTGCTT
GGAAGACCTCATTCATGAAATTGCCTTCCCGGGGAAGTATTTCCAGAATATTGCGAGGTTCCTGCGCCCTTTCCAGCTGT
CAGTGGCCCGTCATGCTAGCAAGAACAGAGTGGGCTTCCTCAAGGAGATGGGCTCACCTGGCTATCGGGGTGAACGCATC
AATCAGCTCATCCGCCAGCTGAACTAG

Library Parental gene expression (RPM)
SRP017611_brain 14 .18 RPM
SRP017611_kidney 20 .47 RPM
SRP017611_liver 11 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 possible_ortholog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Gorilla gorilla ENSGGOG00000009958 possible_ortholog 15 retrogenes
retro_ggor_1009, retro_ggor_1013, retro_ggor_1253, retro_ggor_1261, retro_ggor_1904, retro_ggor_2099, retro_ggor_2108, retro_ggor_2113, retro_ggor_2162, retro_ggor_2282, retro_ggor_2457, retro_ggor_2524, retro_ggor_2591, retro_ggor_2659, retro_ggor_2973,
Macaca mulatta ENSMMUG00000021313 possible_ortholog 1 retrogene
retro_mmul_11,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 ortholog_one2many 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Oryctolagus cuniculus ENSOCUG00000008407 within_species_paralog 12 retrogenes
retro_ocun_109, retro_ocun_1164, retro_ocun_1282, retro_ocun_1342, retro_ocun_1494, retro_ocun_1646, retro_ocun_1879, retro_ocun_456, retro_ocun_501, retro_ocun_718, retro_ocun_727, retro_ocun_785,
Otolemur garnettii ENSOGAG00000012671 ortholog_one2many 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 ortholog_one2one 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2one 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_278 57.96 61.29
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2. retro_ocun_509 97.14 98.79
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3. retro_ocun_598 99.32 58.87
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4. retro_ocun_1393 95.52 54.03
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5. retro_ocun_1604 54.29 66.53
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6. retro_ocun_1818 73.49 63.71
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Download FASTA sequences of all ENSOCUG00000003844 retrocopies