Parental gene:

RPL7L1, ENSPTRG00000018175

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:43488274..43495021(+)


>ENSPTRG00000018175
ATGGCGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAAGCCCTCAA
AGCCACCCAGGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAAT
CATTCCTACATGATTCCTGGCGGCAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAA
TTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGGATTGATGGCGTGAGTTTACTGGTGCAGAGAACCAT
TGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCCAGAATCTAAAAATGCTGCGTATAG
TGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTCATTTTGAAACGTGGACAAGCCAAGGTC
AAGAATAAGACCATCCCTCTGACAGACAACACAGTGATTGAGGAGCACCTGGGGAAGTTTGGCGTCATTTGCTTGGAAGA
CCTCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGATCTCATGGTTCTTGCACCCTTTCCACCTCTCAGTGG
CCCGTCATGCTACCAAAAATAGAGTGGGCTTCCTCAAGGAGATGGGCACACCTGGCTATCGGGGTGAACGCATCAATCAG
CTCATCCGTCAGCTGAACTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 15 .94 RPM
SRP007412_cerebellum 11 .15 RPM
SRP007412_heart 6 .56 RPM
SRP007412_kidney 10 .80 RPM
SRP007412_liver 6 .84 RPM
SRP007412_testis 2 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 possible_ortholog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Homo sapiens ENSG00000146223 ortholog_one2one 22 retrogenes
retro_hsap_1285, retro_hsap_1291, retro_hsap_1602, retro_hsap_1623, retro_hsap_1661, retro_hsap_1836, retro_hsap_2201, retro_hsap_2389, retro_hsap_2735, retro_hsap_2845, retro_hsap_3053, retro_hsap_3068, retro_hsap_3077, retro_hsap_3187, retro_hsap_3250, retro_hsap_3373, retro_hsap_3556, retro_hsap_3641, retro_hsap_3846, retro_hsap_3957, retro_hsap_4770, retro_hsap_4827,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 possible_ortholog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Nomascus leucogenys ENSNLEG00000004649 ortholog_one2one 21 retrogenes
retro_nleu_1375, retro_nleu_1597, retro_nleu_1646, retro_nleu_1661, retro_nleu_2007, retro_nleu_2011, retro_nleu_2017, retro_nleu_2138, retro_nleu_2201, retro_nleu_2282, retro_nleu_2562, retro_nleu_2599, retro_nleu_2694, retro_nleu_2863, retro_nleu_2938, retro_nleu_332, retro_nleu_502, retro_nleu_536, retro_nleu_597, retro_nleu_711, retro_nleu_727,
Otolemur garnettii ENSOGAG00000012671 possible_ortholog 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 possible_ortholog 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2one 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_355 97.50 81.30
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2. retro_ptro_878 84.15 100.00
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3. retro_ptro_882 85.47 94.31
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4. retro_ptro_1074 87.08 84.55
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5. retro_ptro_1088 94.31 100.00
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6. retro_ptro_1127 85.02 100.00
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7. retro_ptro_1162 86.90 58.94
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8. retro_ptro_1671 86.38 86.59
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9. retro_ptro_1849 87.04 100.00
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10. retro_ptro_1927 76.15 52.85
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11. retro_ptro_1987 85.24 84.55
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12. retro_ptro_2069 90.65 100.00
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13. retro_ptro_2076 85.08 100.00
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14. retro_ptro_2198 97.10 83.74
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15. retro_ptro_2257 95.48 71.95
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16. retro_ptro_2293 82.83 92.28
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17. retro_ptro_2416 77.30 65.45
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18. retro_ptro_2466 87.45 100.00
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19. retro_ptro_2622 83.06 99.19
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20. retro_ptro_2686 89.64 78.05
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21. retro_ptro_2916 50.38 53.25
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22. retro_ptro_2933 84.68 100.00
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23. retro_ptro_3212 90.44 55.28
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Download FASTA sequences of all ENSPTRG00000018175 retrocopies