Parental gene:

RPL7L1, ENSG00000146223

Aliases:RPL7L1, dJ475N16.4
Description:ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370]
Organism:Human (Homo sapiens)
Coordinates:6:42847355..42857663(+)


>ENSG00000146223
ATGGCGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAAGCCCTCAA
AGCCACCCAGGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAAGAAAGGAAAAGGGCTCAGGTTTAAGCGACTGGAAT
CATTCCTACATGATTCCTGGCGGCAGAAACGTGACAAGGTGCGTCTCAGACGACTAGAAGTGAAACCTCATGCCTTGGAA
TTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGGATTGACGGCGTGAGTTTACTGGTGCAGAGAACCAT
TGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCCAGAATCTAAAAATGCTGCGTATAG
TGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTCATTTTGAAACGTGGACAAGCCAAGGTC
AAGAATAAGACCATCCCTCTGACAGACAATACAGTGATTGAGGAGCACCTGGGGAAGTTTGGCGTCATTTGCTTGGAAGA
CCTCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGATCTCATGGTTCTTGTGCCCTTTCCACCTCTCAGTGG
CCCGTCATGCTACCAAAAATAGAGTGGGCTTCCTCAAGGAGATGGGCACACCTGGCTATCGGGGTGAACGCATCAATCAG
CTCATCCGTCAGCTGAACTAG

Library Parental gene expression (RPM)
bodymap2_adipose 71 .24 RPM
bodymap2_adrenal 85 .66 RPM
bodymap2_brain 66 .31 RPM
bodymap2_breast 72 .96 RPM
bodymap2_colon 69 .94 RPM
bodymap2_heart 51 .54 RPM
bodymap2_kidney 94 .84 RPM
bodymap2_liver 76 .83 RPM
bodymap2_lung 47 .63 RPM
bodymap2_lymph_node 69 .64 RPM
bodymap2_ovary 87 .92 RPM
bodymap2_prostate 75 .95 RPM
bodymap2_skeletal_muscle 43 .31 RPM
bodymap2_testis 63 .35 RPM
bodymap2_thyroid 105 .78 RPM
bodymap2_white_blood_cells 81 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 possible_ortholog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Homo sapiens ENSG00000147604 within_species_paralog 49 retrogenes
retro_hsap_1001, retro_hsap_1023, retro_hsap_1033, retro_hsap_1034, retro_hsap_1128, retro_hsap_113, retro_hsap_1232, retro_hsap_1281, retro_hsap_1614, retro_hsap_1626, retro_hsap_1844, retro_hsap_1862, retro_hsap_1957, retro_hsap_2008, retro_hsap_203, retro_hsap_2093, retro_hsap_2101, retro_hsap_2588, retro_hsap_2837, retro_hsap_3197, retro_hsap_3204, retro_hsap_3244, retro_hsap_3254, retro_hsap_3356, retro_hsap_3399, retro_hsap_344, retro_hsap_3453, retro_hsap_3493, retro_hsap_3560, retro_hsap_3573, retro_hsap_3625, retro_hsap_3717, retro_hsap_3775, retro_hsap_3883, retro_hsap_3918, retro_hsap_4137, retro_hsap_415, retro_hsap_426, retro_hsap_4306, retro_hsap_4662, retro_hsap_4704, retro_hsap_4718, retro_hsap_4761, retro_hsap_558, retro_hsap_616, retro_hsap_708, retro_hsap_729, retro_hsap_973, retro_hsap_976,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 possible_ortholog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Nomascus leucogenys ENSNLEG00000004649 ortholog_one2one 21 retrogenes
retro_nleu_1375, retro_nleu_1597, retro_nleu_1646, retro_nleu_1661, retro_nleu_2007, retro_nleu_2011, retro_nleu_2017, retro_nleu_2138, retro_nleu_2201, retro_nleu_2282, retro_nleu_2562, retro_nleu_2599, retro_nleu_2694, retro_nleu_2863, retro_nleu_2938, retro_nleu_332, retro_nleu_502, retro_nleu_536, retro_nleu_597, retro_nleu_711, retro_nleu_727,
Otolemur garnettii ENSOGAG00000012671 possible_ortholog 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pan troglodytes ENSPTRG00000018175 ortholog_one2one 23 retrogenes
retro_ptro_1074, retro_ptro_1088, retro_ptro_1127, retro_ptro_1162, retro_ptro_1671, retro_ptro_1849, retro_ptro_1927, retro_ptro_1987, retro_ptro_2069, retro_ptro_2076, retro_ptro_2198, retro_ptro_2257, retro_ptro_2293, retro_ptro_2416, retro_ptro_2466, retro_ptro_2622, retro_ptro_2686, retro_ptro_2916, retro_ptro_2933, retro_ptro_3212, retro_ptro_355, retro_ptro_878, retro_ptro_882,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 possible_ortholog 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2one 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1285 83.33 100.00
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2. retro_hsap_1291 83.56 90.65
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3. retro_hsap_1602 89.42 84.15
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4. retro_hsap_1623 93.50 100.00
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5. retro_hsap_1661 85.43 100.00
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6. retro_hsap_1836 87.59 73.98
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7. retro_hsap_2201 85.45 86.59
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8. retro_hsap_2389 86.49 74.80
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9. retro_hsap_2735 86.23 100.00
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10. retro_hsap_2845 76.15 52.85
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11. retro_hsap_3053 85.65 84.55
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12. retro_hsap_3068 91.46 100.00
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13. retro_hsap_3077 85.08 100.00
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14. retro_hsap_3187 93.85 72.76
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15. retro_hsap_3250 94.31 85.77
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16. retro_hsap_3373 81.97 92.28
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17. retro_hsap_3556 77.30 65.45
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18. retro_hsap_3641 87.85 100.00
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19. retro_hsap_3846 81.45 99.19
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20. retro_hsap_3957 88.02 98.37
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21. retro_hsap_4770 89.07 100.00
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22. retro_hsap_4827 91.18 55.28
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Download FASTA sequences of all ENSG00000146223 retrocopies