Parental gene: | SUMO1, ENSCAFG00000012431 |
| Aliases: | None |
| Description: | Canis lupus familiaris SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) (SUMO1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252263] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 37:11200589..11229743(-) |
>ENSCAFG00000012431
ATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGAGAATACATTAAACTCAAAGTCAT
TGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAA
GACAGGGAGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACTG
GGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACAGGGGGTCATTCAACGATTTAG
ATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGAGAATACATTAAACTCAAAGTCAT
TGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAA
GACAGGGAGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACTG
GGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACAGGGGGTCATTCAACGATTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 29 .45 RPM |
| SRP017611_kidney | 72 .97 RPM |
| SRP017611_liver | 11 .75 RPM |
| SRP012049_cerebellum | 41 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000013225 | possible_ortholog | 5 retrogenes | |
| Bos taurus | ENSBTAG00000009859 | ortholog_many2many | 6 retrogenes | |
| Canis familiaris | ENSCAFG00000004724 | within_species_paralog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000009739 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000004961 | possible_ortholog | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000012143 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000015868 | possible_ortholog | 10 retrogenes | |
| Equus caballus | ENSECAG00000024693 | possible_ortholog | 4 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000013161 | possible_ortholog | 6 retrogenes | |
| Felis catus | ENSFCAG00000031005 | ortholog_one2many | 6 retrogenes | |
| Homo sapiens | ENSG00000116030 | possible_ortholog | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026439 | possible_ortholog | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000022855 | ortholog_one2many | 5 retrogenes | |
| Microcebus murinus | ENSMICG00000008968 | ortholog_one2many | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007504 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000005240 | ortholog_one2many | 7 retrogenes | |
| Mustela putorius furo | ENSMPUG00000000335 | possible_ortholog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000026021 | possible_ortholog | 5 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006997 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000030345 | ortholog_one2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000006870 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013083 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000012817 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000016133 | possible_ortholog | 2 retrogenes | |
| Sorex araneus | ENSSARG00000008205 | possible_ortholog | 8 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000011968 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000025405 | possible_ortholog | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000000642 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_139 | 73.27 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_386 | 73.21 | 55.45 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cfam_985 | 94.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cfam_1226 | 94.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cfam_1253 | 97.06 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cfam_1815 | 92.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cfam_1912 | 64.71 | 67.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cfam_2048 | 90.72 | 96.04 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000012431 retrocopies