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retrocopy
Search for
parental gene
Search for specified retrocopy by ID
:
Retrocopy ID
or specify search parameters:
Parental gene
Select an organism
Nothing specified
All 99 species
All 37 plant species
All 62 animal species
Mammals
Marsupials
Rodents
Primates
Birds
Fish
Vertebrates
Invertebrates
African rice (
Oryza glaberrima
)
Alpaca (
Vicugna pacos
)
Amborella (
Amborella trichopoda
)
Anole lizard (
Anolis carolinensis
)
Armadillo (
Dasypus novemcinctus
)
Barley (
Hordeum vulgare
)
Barrel medic (
Medicago truncatula
)
Brassica oleracea
Brownbeard rice (
Oryza rufipogon
)
Bushbaby (
Otolemur garnettii
)
Cacao (
Theobroma cacao
)
Caenorhabditis elegans
Cat (
Felis catus
)
Chicken (
Gallus gallus
)
Chimpanzee (
Pan troglodytes
)
Chinese cabbage (
Brassica rapa
)
Chinese softshell turtle (
Pelodiscus sinensis
)
Chlamydomonas reinhardtii
Cod (
Gadus morhua
)
Coelacanth (
Latimeria chalumnae
)
Cow (
Bos taurus
)
Dog (
Canis familiaris
)
Dolphin (
Tursiops truncatus
)
Duck (
Anas platyrhynchos
)
Elephant (
Loxodonta africana
)
Ferret (
Mustela putorius furo
)
Flycatcher (
Ficedula albicollis
)
Foxtail millet (
Setaria italica
)
Fruit fly (
Drosophila melanogaster
)
Fugu rubripes (
Takifugu rubripes
)
Gibbon (
Nomascus leucogenys
)
Gorilla (
Gorilla gorilla
)
Grape (
Vitis vinifera
)
Guinea Pig (
Cavia porcellus
)
Hedgehog (
Erinaceus europaeus
)
Horse (
Equus caballus
)
Human (
Homo sapiens
)
Hyrax (
Procavia capensis
)
Indian wild rice (
Oryza nivara
)
Kangaroo rat (
Dipodomys ordii
)
Lamprey (
Petromyzon marinus
)
Leersia perrieri
Lesser hedgehog tenrec (
Echinops telfairi
)
Longstamen rice (
Oryza longistaminata
)
Lyre-leaved rock-cress (
Arabidopsis lyrata
)
Maize (
Zea mays
)
Marmoset (
Callithrix jacchus
)
Medaka (
Oryzias latipes
)
Megabat (
Pteropus vampyrus
)
Microbat (
Myotis lucifugus
)
Moss (
Physcomitrella patens
)
Mouse (
Mus musculus
)
Mouse Lemur (
Microcebus murinus
)
Mouse-ear cress (
Arabidopsis thaliana
)
Opossum (
Monodelphis domestica
)
Orangutan (
Pongo abelii
)
Oryza barthii
Oryza brachyantha
Oryza glumaepatula
Oryza meridionalis
Ostreococcus lucimarinus
Pacific transparent sea squirt (
Ciona savignyi
)
Panda (
Ailuropoda melanoleuca
)
Peach (
Prunus persica
)
Pig (
Sus scrofa
)
Platyfish (
Xiphophorus maculatus
)
Platypus (
Ornithorhynchus anatinus
)
Potato (
Solanum tuberosum
)
Purple false brome (
Brachypodium distachyon
)
Rabbit (
Oryctolagus cuniculus
)
Rat (
Rattus norvegicus
)
Red rice (
Oryza punctata
)
Rhesus macaque (
Macaca mulatta
)
Rice subsp. indica (
Oryza sativa indica
)
Rice subsp. japonica (
Oryza sativa japonica
)
Shrew (
Sorex araneus
)
Sloth (
Choloepus hoffmanni
)
Sorghum (
Sorghum bicolor
)
Southern American pika (
Ochotona princeps
)
Soybean (
Glycine max
)
Spikemoss (
Selaginella moellendorffii
)
Squirrel (
Ictidomys tridecemlineatus
)
Stickleback (
Gasterosteus aculeatus
)
Tarsier (
Tarsius syrichta
)
Tasmanian devil (
Sarcophilus harrisii
)
Tausch goatgrass (
Aegilops tauschii
)
Tetraodon (
Tetraodon nigroviridis
)
Tilapia (
Oreochromis niloticus
)
Tomato (
Solanum lycopersicum
)
Treeshrew (
Tupaia belangeri
)
Turkey (
Meleagris gallopavo
)
Vase tunicate (
Ciona intestinalis
)
Wallaby (
Macropus eugenii
)
Western balsam poplar (
Populus trichocarpa
)
Wheat (
Triticum aestivum
)
Wild banana (
Musa acuminata
)
Xenopus (
Xenopus tropicalis
)
Zebrafinch (
Taeniopygia guttata
)
Zebrafish (
Danio rerio
)
Retrocopy status
Nothing specified
KNOWN_PROTEIN_CODING
KNOWN_PSEUDOGENE
NOVEL
Genomic region
+ or - strand
+
-
ORF conservation
Nothing specified
Conserved
Not conserved
Expressed in
Nothing specified
Adipose
Adrenal
Brain
Breast
Colon
Heart
Kidney
Liver
Lung
Lymph node
Muscle
Ovary
Prostate
Spleen
Testis
Thyroid
Articular cartilage
Ascending colon
Brain prefrontal cortex
Cerebellum
Dewlap
Embryo
Gill
Pectoral fin
Pelvic fin
Pharynx
Placenta
Placental villous
Quadricep muscle
Skeletal muscle
Synovial membrane
Tail muscle
White blood cells
Min. expression
Percent identity
Ignore
<
≤
=
≥
>
Identity (range):
AND
OR
Ignore
<
≤
≥
>
Coverage
Ignore
<
≤
=
≥
>
Coverage (range):
AND
OR
Ignore
<
≤
≥
>
... or ...
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Order by
Internal MySQL ID
RetrogeneDB ID
Species (latin name)
Identity
Coverage
Stop codons number
Frameshifts number
Ascending
Descending
Frameshifts
Ignore
<
≤
=
≥
>
Frameshifts (range):
AND
OR
Ignore
<
≤
≥
>
Stop codons
Ignore
<
≤
=
≥
>
Stop codons (range):
AND
OR
Ignore
<
≤
≥
>
Inside intron
Nothing specified
Yes
No
of
Has orthologs
Nothing specified
Yes
in:
Eutheria
Teleost
Neognath
Experimentally validated
ChIP-Seq validated
EST validated
TSS validated
Population specific
Nothing specified
Yes
Select columns to show in the result table
Order number - # (mendatory)
Retrocopy ID (mendatory)
Species
Genomic coordinates
Retrocopy status
Parental gene ID
Inside intron of
Identity
Coverage
Stop codons
Frameshifts
Conserved ORF - (mendatory) - content of this field will not be displayed in the downloaded result
Expression evidence - (mendatory) - content of this field will not be displayed in the downloaded result
RDV - (mendatory) - content of this field will not be displayed in the downloaded result
... or ...
Hide additional search options
... or ...
Reset form
Specify search parameters:
Parental gene name
Select an organism
Nothing specified
All 99 species
All 37 plant species
All 62 animal species
Mammals
Marsupials
Rodents
Primates
Birds
Fish
Vertebrates
Invertebrates
African rice (
Oryza glaberrima
)
Alpaca (
Vicugna pacos
)
Amborella (
Amborella trichopoda
)
Anole lizard (
Anolis carolinensis
)
Armadillo (
Dasypus novemcinctus
)
Barley (
Hordeum vulgare
)
Barrel medic (
Medicago truncatula
)
Brassica oleracea
Brownbeard rice (
Oryza rufipogon
)
Bushbaby (
Otolemur garnettii
)
Cacao (
Theobroma cacao
)
Caenorhabditis elegans
Cat (
Felis catus
)
Chicken (
Gallus gallus
)
Chimpanzee (
Pan troglodytes
)
Chinese cabbage (
Brassica rapa
)
Chinese softshell turtle (
Pelodiscus sinensis
)
Chlamydomonas reinhardtii
Cod (
Gadus morhua
)
Coelacanth (
Latimeria chalumnae
)
Cow (
Bos taurus
)
Dog (
Canis familiaris
)
Dolphin (
Tursiops truncatus
)
Duck (
Anas platyrhynchos
)
Elephant (
Loxodonta africana
)
Ferret (
Mustela putorius furo
)
Flycatcher (
Ficedula albicollis
)
Foxtail millet (
Setaria italica
)
Fruit fly (
Drosophila melanogaster
)
Fugu rubripes (
Takifugu rubripes
)
Gibbon (
Nomascus leucogenys
)
Gorilla (
Gorilla gorilla
)
Grape (
Vitis vinifera
)
Guinea Pig (
Cavia porcellus
)
Hedgehog (
Erinaceus europaeus
)
Horse (
Equus caballus
)
Human (
Homo sapiens
)
Hyrax (
Procavia capensis
)
Indian wild rice (
Oryza nivara
)
Kangaroo rat (
Dipodomys ordii
)
Lamprey (
Petromyzon marinus
)
Leersia perrieri
Lesser hedgehog tenrec (
Echinops telfairi
)
Longstamen rice (
Oryza longistaminata
)
Lyre-leaved rock-cress (
Arabidopsis lyrata
)
Maize (
Zea mays
)
Marmoset (
Callithrix jacchus
)
Medaka (
Oryzias latipes
)
Megabat (
Pteropus vampyrus
)
Microbat (
Myotis lucifugus
)
Moss (
Physcomitrella patens
)
Mouse (
Mus musculus
)
Mouse Lemur (
Microcebus murinus
)
Mouse-ear cress (
Arabidopsis thaliana
)
Opossum (
Monodelphis domestica
)
Orangutan (
Pongo abelii
)
Oryza barthii
Oryza brachyantha
Oryza glumaepatula
Oryza meridionalis
Ostreococcus lucimarinus
Pacific transparent sea squirt (
Ciona savignyi
)
Panda (
Ailuropoda melanoleuca
)
Peach (
Prunus persica
)
Pig (
Sus scrofa
)
Platyfish (
Xiphophorus maculatus
)
Platypus (
Ornithorhynchus anatinus
)
Potato (
Solanum tuberosum
)
Purple false brome (
Brachypodium distachyon
)
Rabbit (
Oryctolagus cuniculus
)
Rat (
Rattus norvegicus
)
Red rice (
Oryza punctata
)
Rhesus macaque (
Macaca mulatta
)
Rice subsp. indica (
Oryza sativa indica
)
Rice subsp. japonica (
Oryza sativa japonica
)
Shrew (
Sorex araneus
)
Sloth (
Choloepus hoffmanni
)
Sorghum (
Sorghum bicolor
)
Southern American pika (
Ochotona princeps
)
Soybean (
Glycine max
)
Spikemoss (
Selaginella moellendorffii
)
Squirrel (
Ictidomys tridecemlineatus
)
Stickleback (
Gasterosteus aculeatus
)
Tarsier (
Tarsius syrichta
)
Tasmanian devil (
Sarcophilus harrisii
)
Tausch goatgrass (
Aegilops tauschii
)
Tetraodon (
Tetraodon nigroviridis
)
Tilapia (
Oreochromis niloticus
)
Tomato (
Solanum lycopersicum
)
Treeshrew (
Tupaia belangeri
)
Turkey (
Meleagris gallopavo
)
Vase tunicate (
Ciona intestinalis
)
Wallaby (
Macropus eugenii
)
Western balsam poplar (
Populus trichocarpa
)
Wheat (
Triticum aestivum
)
Wild banana (
Musa acuminata
)
Xenopus (
Xenopus tropicalis
)
Zebrafinch (
Taeniopygia guttata
)
Zebrafish (
Danio rerio
)
Parental gene description
Retrocopy number
Ignore
<
≤
=
≥
>
Retrocopy number (range):
AND
OR
Ignore
<
≤
≥
>
Parental gene status
Nothing specified
ANNOTATED
KNOWN
KNOWN_BY_PROJECTION
NOVEL
PREDICTED
PUTATIVE
Expressed in
Nothing specified
Adipose
Adrenal
Brain
Breast
Colon
Heart
Kidney
Liver
Lung
Lymph node
Muscle
Ovary
Prostate
Spleen
Testis
Thyroid
Articular cartilage
Ascending colon
Brain prefrontal cortex
Cerebellum
Dewlap
Embryo
Gill
Pectoral fin
Pelvic fin
Pharynx
Placenta
Placental villous
Quadricep muscle
Skeletal muscle
Synovial membrane
Tail muscle
White blood cells
Min. expression
Order by
Internal MySQL ID
Ensembl accession number
Species (latin name)
Gene symbol
Aliases
Status
Description
Ascending
Descending
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