Parental gene:

SUMO1, ENSAMEG00000013225

Aliases:None
Description:small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192652.1:1080302..1093089(+)


>ENSAMEG00000013225
CAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGAGAATACATTAAACTCAAAGTCATTGGACAGGA
TAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAAGACAGGGAG
TTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACTGGGAATGGAG
GAAGAAGATGTGATTGAAGTTTATCAGGAACAAACAGGGGGTCATTCAACGATT

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002071 within_species_paralog 3 retrogenes
retro_amel_1388, retro_amel_1586, retro_amel_1863,
Ailuropoda melanoleuca ENSAMEG00000009189 within_species_paralog 13 retrogenes
retro_amel_1097, retro_amel_1125, retro_amel_1199, retro_amel_1263, retro_amel_1434, retro_amel_152, retro_amel_1665, retro_amel_276, retro_amel_35, retro_amel_616, retro_amel_653, retro_amel_662, retro_amel_722,
Bos taurus ENSBTAG00000009859 possible_ortholog 6 retrogenes
retro_btau_112, retro_btau_1512, retro_btau_1705, retro_btau_357, retro_btau_363, retro_btau_499,
Canis familiaris ENSCAFG00000012431 possible_ortholog 8 retrogenes
retro_cfam_1226, retro_cfam_1253, retro_cfam_139, retro_cfam_1815, retro_cfam_1912, retro_cfam_2048, retro_cfam_386, retro_cfam_985,
Choloepus hoffmanni ENSCHOG00000009739 possible_ortholog 2 retrogenes
retro_chof_190, retro_chof_2068,
Dasypus novemcinctus ENSDNOG00000015868 ortholog_one2one 10 retrogenes
retro_dnov_1070, retro_dnov_1324, retro_dnov_1610, retro_dnov_1623, retro_dnov_1826, retro_dnov_1876, retro_dnov_2068, retro_dnov_2330, retro_dnov_2423, retro_dnov_997,
Felis catus ENSFCAG00000031005 possible_ortholog 6 retrogenes
retro_fcat_1520, retro_fcat_218, retro_fcat_26, retro_fcat_472, retro_fcat_6, retro_fcat_862,
Loxodonta africana ENSLAFG00000022855 possible_ortholog 5 retrogenes
retro_lafr_111, retro_lafr_1148, retro_lafr_189, retro_lafr_540, retro_lafr_951,
Myotis lucifugus ENSMLUG00000007504 possible_ortholog 2 retrogenes
retro_mluc_1346, retro_mluc_188,
Nomascus leucogenys ENSNLEG00000006997 possible_ortholog 4 retrogenes
retro_nleu_277, retro_nleu_384, retro_nleu_855, retro_nleu_865,
Otolemur garnettii ENSOGAG00000030345 possible_ortholog 1 retrogene
retro_ogar_215,
Pongo abelii ENSPPYG00000013083 possible_ortholog 3 retrogenes
retro_pabe_11, retro_pabe_1830, retro_pabe_775,
Pan troglodytes ENSPTRG00000012817 possible_ortholog 1 retrogene
retro_ptro_119,
Sarcophilus harrisii ENSSHAG00000011968 ortholog_one2many 1 retrogene
retro_shar_375,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_49 83.67 100.00
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2. retro_amel_233 73.77 62.24
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3. retro_amel_236 77.78 100.00
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4. retro_amel_315 80.00 100.00
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5. retro_amel_1068 76.92 77.55
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Download FASTA sequences of all ENSAMEG00000013225 retrocopies