Parental gene:

SUMO1, ENSCJAG00000004961

Aliases:None
Description:small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:117815218..117851467(-)


>ENSCJAG00000004961
ATGTCTGATCAGGAGGCAAAACCTTCAACTGAGGACTTGGGGGATAAGAAGGAAGGTGAATATATTAAACTCAAAGTTAT
TGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAA
GACAGGGTGTTCCAATGAATTCACTCAGGTTTCTCTTTGAGGGTCAGAGAATTGCTGATAATCATACTCCAAAAGAAGCA
CAGCCCACGCCTGCAATCCCAGCACTTTGGGAGGCTGAGGCGGGCTGCATCACTCTAGGTCAAGAGAGACCAGCCTGGGC
AATATGGCGAAACCATGTCTCTACTGAAAATAGAATAATTAGCTGGCTATGTCTGGGAATGGAGGAAGAAGATGTGATTG
AAGTTTATCAGGAACAAACAGGGGGTCATTCAACAGTTTAG

Library Parental gene expression (RPM)
SRP051959_spleen 28 .07 RPM
SRP051959_skeletal_muscle 30 .90 RPM
SRP051959_lymph_node 27 .33 RPM
SRP051959_lung 30 .62 RPM
SRP051959_liver 31 .04 RPM
SRP051959_kidney 36 .23 RPM
SRP051959_heart 25 .03 RPM
SRP051959_colon 23 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009859 possible_ortholog 6 retrogenes
retro_btau_112, retro_btau_1512, retro_btau_1705, retro_btau_357, retro_btau_363, retro_btau_499,
Canis familiaris ENSCAFG00000012431 possible_ortholog 8 retrogenes
retro_cfam_1226, retro_cfam_1253, retro_cfam_139, retro_cfam_1815, retro_cfam_1912, retro_cfam_2048, retro_cfam_386, retro_cfam_985,
Callithrix jacchus ENSCJAG00000010529 within_species_paralog 20 retrogenes
retro_cjac_1110, retro_cjac_1128, retro_cjac_1525, retro_cjac_1752, retro_cjac_1938, retro_cjac_1957, retro_cjac_1993, retro_cjac_2460, retro_cjac_2481, retro_cjac_2616, retro_cjac_2651, retro_cjac_2886, retro_cjac_2899, retro_cjac_2985, retro_cjac_3088, retro_cjac_3137, retro_cjac_4123, retro_cjac_711, retro_cjac_771, retro_cjac_774,
Cavia porcellus ENSCPOG00000012143 ortholog_one2one 1 retrogene
retro_cpor_1279,
Equus caballus ENSECAG00000024693 ortholog_one2one 4 retrogenes
retro_ecab_199, retro_ecab_365, retro_ecab_570, retro_ecab_935,
Felis catus ENSFCAG00000031005 possible_ortholog 6 retrogenes
retro_fcat_1520, retro_fcat_218, retro_fcat_26, retro_fcat_472, retro_fcat_6, retro_fcat_862,
Homo sapiens ENSG00000116030 ortholog_one2one 5 retrogenes
retro_hsap_2007, retro_hsap_240, retro_hsap_2489, retro_hsap_262, retro_hsap_897,
Gorilla gorilla ENSGGOG00000026439 ortholog_one2one 5 retrogenes
retro_ggor_1451, retro_ggor_1550, retro_ggor_299, retro_ggor_311, retro_ggor_725,
Myotis lucifugus ENSMLUG00000007504 possible_ortholog 2 retrogenes
retro_mluc_1346, retro_mluc_188,
Mustela putorius furo ENSMPUG00000000335 ortholog_one2one 2 retrogenes
retro_mputfur_257, retro_mputfur_33,
Mus musculus ENSMUSG00000026021 ortholog_one2one 5 retrogenes
retro_mmus_1594, retro_mmus_2129, retro_mmus_2135, retro_mmus_252, retro_mmus_2962,
Otolemur garnettii ENSOGAG00000030345 possible_ortholog 1 retrogene
retro_ogar_215,
Pongo abelii ENSPPYG00000013083 ortholog_one2many 3 retrogenes
retro_pabe_11, retro_pabe_1830, retro_pabe_775,
Pan troglodytes ENSPTRG00000012817 ortholog_one2many 1 retrogene
retro_ptro_119,
Rattus norvegicus ENSRNOG00000016133 ortholog_one2one 2 retrogenes
retro_rnor_2015, retro_rnor_813,
Sarcophilus harrisii ENSSHAG00000011968 ortholog_one2one 1 retrogene
retro_shar_375,
Ictidomys tridecemlineatus ENSSTOG00000025405 ortholog_one2one 4 retrogenes
retro_itri_1193, retro_itri_1232, retro_itri_216, retro_itri_668,
Tursiops truncatus ENSTTRG00000000642 ortholog_one2one 4 retrogenes
retro_ttru_1646, retro_ttru_1652, retro_ttru_309, retro_ttru_399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1686 69.90 100.00
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2. retro_cjac_1932 80.39 100.00
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3. retro_cjac_2610 85.15 100.00
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Download FASTA sequences of all ENSCJAG00000004961 retrocopies