RetrogeneDB ID: | retro_acar_25 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | GL343488.1:150470..151211(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSACAG00000016687 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | YWHAZ | ||
| Ensembl ID: | ENSACAG00000008694 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_acar_25
ATGGCAAGGAACCACCAAGTACAGAAGGCCAAGCTGGCCGAGCAGGCCGAGCGTTACGAAGACATGGCCGACTTCATGAA
GGCGGTGGTGGAGGACGGGTCCGAACTCTCCAACGAGGAGCGCAACCTCCTCTCGGTGGCTTACAAGAACGTGGTGGGCT
GCCAGAGGTCTGCCTGGAGGGTCATCTCCAGCATTGAGCACAAGACCGAGGAAGGCGACGACAAGGCTCAGCTGGTGAAT
GAGTACCGGGAGAAGATCGAGAAGGAGCTGAAGAACGTCTGCAACGTTGTCTTAGGCCTGCTGGACAAGCACCTCATCCC
GAAAGCCGGTGACGCAGAGAGCAAAGTTTTCTACTTGAAGATGAAAGGTGACTATTTCCGCTACCTGGCCGAGGTGGCTG
CCGGCGATGACCGCAAACAGATCATCGATAACGCCCGGAAAGCCTACCAAGAGGCGATGGACATCAGCAAGAAGGAGATG
CAACCCACAAACCCCATCCGCTTGGGCCTTGCCCTCAATTTCTCGGTCTTCCACTATGAGATTGCCAACGCTCCCGAAGA
TGCCATCAAACTGGCCAAGACCACCTTTGACGAGGCCATGGGAGACCTCCACACGCTCAGCGAAGACTCCTACAAGGACA
GCACCCTCATCATGCAGCTTCTCAGAGACAACCTCACGCTATGGACGGCGGAGTGTTCAGGAGAAGAAGGGGGAGAGGCC
GGCGAAGAGCCCAAGAACTGA
ORF - retro_acar_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.95 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTE |
| M..N..VQKAKLAEQAERY.DMA..MK.V.E.G.ELSNEERNLLSVAYKNVVG..RS.WRV.SSIE.KTE | |
| Retrocopy | MARNHQVQKAKLAEQAERYEDMADFMKAVVEDGSELSNEERNLLSVAYKNVVGCQRSAWRVISSIEHKTE |
| Parental | GAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKG |
| ....K.Q...EYREKIE.EL...CN.VL.LL.K.LIP.A..AESKVFYLKMKGDY.RYLAEVAAGDD.K. | |
| Retrocopy | EGDDKAQLVNEYREKIEKELKNVCNVVLGLLDKHLIPKAGDAESKVFYLKMKGDYFRYLAEVAAGDDRKQ |
| Parental | IVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLSEES |
| I......AYQEA..ISKKEMQPT.PIRLGLALNFSVF.YEI.N.PE.A..LAKT.FDEA...L.TLSE.S | |
| Retrocopy | IIDNARKAYQEAMDISKKEMQPTNPIRLGLALNFSVFHYEIANAPEDAIKLAKTTFDEAMGDLHTLSEDS |
| Parental | YKDSTLIMQLLRDNLTLWTSDTQGDE-AEAGEGGEN |
| YKDSTLIMQLLRDNLTLWT....G.E..EAGE...N | |
| Retrocopy | YKDSTLIMQLLRDNLTLWTAECSGEEGGEAGEEPKN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .26 RPM | 753 .66 RPM |
| SRP009831_brain | 0 .71 RPM | 2208 .32 RPM |
| SRP009831_dewlap | 90 .28 RPM | 380 .69 RPM |
| SRP009831_embryo | 2 .13 RPM | 1019 .88 RPM |
| SRP009831_heart | 3 .99 RPM | 244 .94 RPM |
| SRP009831_liver | 0 .49 RPM | 381 .58 RPM |
| SRP009831_lung | 4 .94 RPM | 273 .47 RPM |
| SRP009831_ovary | 2 .66 RPM | 321 .22 RPM |
| SRP009831_skeletal_muscle | 1 .89 RPM | 41 .99 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_25 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_25 was not experimentally validated.