Parental gene:

YWHAZ, ENSCPOG00000020285

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_0:15513133..15532714(+)


>ENSCPOG00000020285
ATGGATAAAAACGAGCTGGTACAGAAGGCCAAACTGGCCGAGCAGGCTGAGCGATATGATGACATGGCAGCCTGCATGAA
GTCTGTAACTGAGCAAGGCGCTGAATTATCTAACGAGGAGAGGAATCTTCTCTCCGTTGCTTATAAAAATGTTGTAGGAG
CCCGTAGGTCATCTTGGAGGGTTGTCTCAAGTATTGAGCAAAAGACGGAAGGTGCTGAGAAAAAGCAGCAGATGGCTCGA
GAATACAGAGAGAAAATTGAGACTGAGCTAAGGGATATCTGCAACGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCC
CAATGCTTCACAAGCAGAGAGCAAAGTCTTTTATTTGAAAATGAAGGGAGACTACTACCGTTACTTGGCCGAAGTTGCTG
CTGGAGATGATAAGAAAGGCATTGTGGATCAGTCACAACAAGCATACCAAGAAGCTTTTGAAATCAGCAAAAAGGAAATG
CAACCAACGCATCCTATCAGATTGGGTCTGGCCCTTAACTTCTCCGTGTTCTATTACGAGATTCTCAACTCTCCAGAGAA
AGCCTGTTCTCTGGCAAAGACAGCTTTTGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCATACAAGGACA
GCACGCTAATAATGCAGTTACTGAGAGACAACTTGACATTGTGGACATCGGATACCCAAGGAGATGAAGCTGAAGCAGGA
GAAGGAGGGGAAAATTAA

Library Parental gene expression (RPM)
SRP017611_brain 310 .76 RPM
SRP017611_kidney 57 .89 RPM
SRP017611_liver 21 .33 RPM
SRP040447_lung 92 .13 RPM
SRP040447_skeletal_muscle 17 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000008694 ortholog_one2one 2 retrogenes
retro_acar_25, retro_acar_44,
Bos taurus ENSBTAG00000000236 possible_ortholog 4 retrogenes
retro_btau_1482, retro_btau_635, retro_btau_68, retro_btau_910,
Canis familiaris ENSCAFG00000000580 possible_ortholog 6 retrogenes
retro_cfam_1302, retro_cfam_1521, retro_cfam_158, retro_cfam_1840, retro_cfam_233, retro_cfam_465,
Choloepus hoffmanni ENSCHOG00000002798 ortholog_one2one 9 retrogenes
retro_chof_1572, retro_chof_1703, retro_chof_1890, retro_chof_2321, retro_chof_2346, retro_chof_2669, retro_chof_292, retro_chof_315, retro_chof_933,
Callithrix jacchus ENSCJAG00000015844 ortholog_one2one 5 retrogenes
retro_cjac_1769, retro_cjac_2164, retro_cjac_3000, retro_cjac_31, retro_cjac_881,
Cavia porcellus ENSCPOG00000008007 other_paralog 1 retrogene
retro_cpor_307,
Cavia porcellus ENSCPOG00000011321 within_species_paralog 4 retrogenes
retro_cpor_135, retro_cpor_1463, retro_cpor_616, retro_cpor_668,
Dasypus novemcinctus ENSDNOG00000001672 possible_ortholog 10 retrogenes
retro_dnov_1007, retro_dnov_117, retro_dnov_1354, retro_dnov_1579, retro_dnov_1769, retro_dnov_1907, retro_dnov_1993, retro_dnov_2588, retro_dnov_892, retro_dnov_99,
Ficedula albicollis ENSFALG00000005860 ortholog_one2one 1 retrogene
retro_falb_13,
Felis catus ENSFCAG00000032017 ortholog_one2one 4 retrogenes
retro_fcat_1563, retro_fcat_1631, retro_fcat_1697, retro_fcat_60,
Gallus gallus ENSGALG00000010725 ortholog_one2one 1 retrogene
retro_ggal_3,
Gorilla gorilla ENSGGOG00000022133 ortholog_one2one 9 retrogenes
retro_ggor_1092, retro_ggor_1754, retro_ggor_211, retro_ggor_2379, retro_ggor_2997, retro_ggor_2998, retro_ggor_3020, retro_ggor_499, retro_ggor_544,
Loxodonta africana ENSLAFG00000004944 ortholog_one2one 2 retrogenes
retro_lafr_1089, retro_lafr_112,
Myotis lucifugus ENSMLUG00000017323 ortholog_one2one 3 retrogenes
retro_mluc_1617, retro_mluc_1686, retro_mluc_296,
Macaca mulatta ENSMMUG00000006489 ortholog_one2one 7 retrogenes
retro_mmul_1859, retro_mmul_1883, retro_mmul_2136, retro_mmul_2247, retro_mmul_2422, retro_mmul_2503, retro_mmul_451,
Mus musculus ENSMUSG00000022285 ortholog_one2one 3 retrogenes
retro_mmus_163, retro_mmus_2187, retro_mmus_744,
Oryctolagus cuniculus ENSOCUG00000000734 ortholog_one2many 2 retrogenes
retro_ocun_1091, retro_ocun_248,
Pongo abelii ENSPPYG00000018791 possible_ortholog 7 retrogenes
retro_pabe_103, retro_pabe_1242, retro_pabe_2047, retro_pabe_3417, retro_pabe_3740, retro_pabe_556, retro_pabe_89,
Pelodiscus sinensis ENSPSIG00000003703 ortholog_one2one 1 retrogene
retro_psin_13,
Sarcophilus harrisii ENSSHAG00000012671 possible_ortholog 2 retrogenes
retro_shar_126, retro_shar_409,
Sus scrofa ENSSSCG00000006062 ortholog_one2one 2 retrogenes
retro_sscr_222, retro_sscr_35,
Ictidomys tridecemlineatus ENSSTOG00000023864 ortholog_one2one 3 retrogenes
retro_itri_162, retro_itri_483, retro_itri_887,
Taeniopygia guttata ENSTGUG00000012078 ortholog_one2one 1 retrogene
retro_tgut_4,
Tursiops truncatus ENSTTRG00000015906 ortholog_one2one 4 retrogenes
retro_ttru_15, retro_ttru_1540, retro_ttru_207, retro_ttru_455,
Vicugna pacos ENSVPAG00000005865 ortholog_one2one 1 retrogene
retro_vpac_350,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_220 68.89 72.24
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2. retro_cpor_323 67.39 91.02
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3. retro_cpor_434 80.41 60.00
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4. retro_cpor_592 54.84 97.96
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5. retro_cpor_644 69.16 90.61
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Download FASTA sequences of all ENSCPOG00000020285 retrocopies