Parental gene:

Rbbp4, ENSRNOG00000021492

Aliases:None
Description:histone-binding protein RBBP4 [Source:RefSeq peptide;Acc:NP_001101382]
Organism:Rat (Rattus norvegicus)
Coordinates:5:151232121..151256539(-)


>ENSRNOG00000021492
ATGGCTGACAAGGAAGCGGCCTTTGACGACGCGGTGGAAGAACGTGTGATCAACGAGGAGTACAAGATATGGAAGAAGAA
CACCCCATTTCTTTATGATTTGGTGATGACCCATGCCCTGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTGA
CCAGGCCTGAAGGGAAAGATTTCAGCATTCATCGGCTTGTCCTGGGAACACACACATCAGATGAACAAAACCACCTTGTG
ATAGCCAGTGTCCAGCTCCCTAATGACGATGCTCAGTTTGATGCATCCCATTATGACAGTGAAAAAGGAGAATTTGGAGG
TTTTGGTTCTGTCAGTGGGAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTAAACAGGGCCAGGTACATGC
CTCAGAACCCTTGCATCATTGCAACGAAGACTCCATCCAGTGATGTTCTTGTTTTTGACTACACAAAGCACCCTTCTAAA
CCAGACCCTTCTGGAGAATGCAACCCAGACTTGCGTCTCCGTGGGCATCAGAAGGAAGGTTATGGGCTTTCTTGGAATCC
AAATCTCAGCGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCAGTTCCCAAAGAAG
GAAAAGTGGTGGATGCAAAGACCATCTTTACAGGGCATACAGCAGTAGTGGAGGACGTTTCCTGGCATCTGCTCCATGAG
TCTCTGTTCGGGTCAGTTGCTGATGACCAGAAACTCATGATTTGGGATACTCGTTCAAACAATACTTCCAAGCCAAGCCA
CTCGGTTGATGCTCACACAGCTGAAGTGAATTGCTTATCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACGGGATCAG
CTGACAAGACTGTTGCCTTGTGGGATCTGAGAAATCTGAAACTCAAGTTGCATTCCTTTGAATCACATAAGGATGAAATA
TTCCAAGTTCAATGGTCACCTCACAATGAGACTATCTTAGCTTCCAGTGGCACTGATCGTCGGCTGAATGTCTGGGATCT
AAGTAAAATTGGAGAAGAACAGTCCCCAGAAGATGCAGAGGATGGCCCACCAGAGTTGTTGTTTATTCATGGTGGTCACA
CTGCCAAGATATCTGACTTCTCCTGGAATCCCAATGAACCTTGGGTAATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTGTGGCAGATGGCAGAGAACATTTATAATGATGAAGACCCTGAAGGAAGTGTGGATCCAGAAGGACAAGGATCCTAG

Library Parental gene expression (RPM)
SRP017611_brain 28 .54 RPM
SRP017611_kidney 33 .43 RPM
SRP017611_liver 14 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005904 ortholog_one2one 2 retrogenes
retro_btau_1610, retro_btau_630,
Canis familiaris ENSCAFG00000010527 ortholog_one2one 1 retrogene
retro_cfam_1550,
Choloepus hoffmanni ENSCHOG00000004066 ortholog_one2one 6 retrogenes
retro_chof_1382, retro_chof_1649, retro_chof_1867, retro_chof_2116, retro_chof_2327, retro_chof_908,
Callithrix jacchus ENSCJAG00000001021 ortholog_one2one 7 retrogenes
retro_cjac_1157, retro_cjac_1787, retro_cjac_1873, retro_cjac_244, retro_cjac_2557, retro_cjac_2719, retro_cjac_2939,
Cavia porcellus ENSCPOG00000015352 ortholog_one2one 3 retrogenes
retro_cpor_154, retro_cpor_27, retro_cpor_899,
Equus caballus ENSECAG00000022784 ortholog_one2one 1 retrogene
retro_ecab_767,
Echinops telfairi ENSETEG00000020008 ortholog_one2one 4 retrogenes
retro_etel_1088, retro_etel_1462, retro_etel_1877, retro_etel_676,
Felis catus ENSFCAG00000027017 ortholog_one2one 1 retrogene
retro_fcat_1507,
Homo sapiens ENSG00000162521 ortholog_one2one 6 retrogenes
retro_hsap_1305, retro_hsap_2675, retro_hsap_2814, retro_hsap_3292, retro_hsap_3600, retro_hsap_3601,
Gorilla gorilla ENSGGOG00000011313 possible_ortholog 4 retrogenes
retro_ggor_1022, retro_ggor_1314, retro_ggor_1867, retro_ggor_2428,
Macropus eugenii ENSMEUG00000014379 ortholog_one2one 1 retrogene
retro_meug_1032,
Myotis lucifugus ENSMLUG00000000749 ortholog_one2one 2 retrogenes
retro_mluc_2275, retro_mluc_892,
Macaca mulatta ENSMMUG00000009940 ortholog_one2one 1 retrogene
retro_mmul_75,
Monodelphis domestica ENSMODG00000017415 possible_ortholog 6 retrogenes
retro_mdom_1542, retro_mdom_1833, retro_mdom_1873, retro_mdom_1900, retro_mdom_563, retro_mdom_765,
Mustela putorius furo ENSMPUG00000015214 ortholog_one2one 1 retrogene
retro_mputfur_104,
Mus musculus ENSMUSG00000057236 ortholog_one2one 1 retrogene
retro_mmus_356,
Nomascus leucogenys ENSNLEG00000002805 ortholog_one2one 6 retrogenes
retro_nleu_1061, retro_nleu_1179, retro_nleu_1194, retro_nleu_1356, retro_nleu_1379, retro_nleu_2982,
Otolemur garnettii ENSOGAG00000011632 possible_ortholog 2 retrogenes
retro_ogar_3079, retro_ogar_3297,
Procavia capensis ENSPCAG00000011030 possible_ortholog 1 retrogene
retro_pcap_116,
Petromyzon marinus ENSPMAG00000007189 ortholog_one2many 1 retrogene
retro_pmar_26,
Pongo abelii ENSPPYG00000001588 ortholog_one2one 6 retrogenes
retro_pabe_1093, retro_pabe_2210, retro_pabe_2720, retro_pabe_2958, retro_pabe_3529, retro_pabe_3611,
Pteropus vampyrus ENSPVAG00000010981 ortholog_one2one 2 retrogenes
retro_pvam_1094, retro_pvam_902,
Rattus norvegicus ENSRNOG00000005157 within_species_paralog 1 retrogene
retro_rnor_1182,
Sarcophilus harrisii ENSSHAG00000010923 ortholog_one2one 1 retrogene
retro_shar_399,
Ictidomys tridecemlineatus ENSSTOG00000012011 ortholog_one2one 1 retrogene
retro_itri_1168,
Tupaia belangeri ENSTBEG00000002236 possible_ortholog 3 retrogenes
retro_tbel_1360, retro_tbel_1718, retro_tbel_3802,
Vicugna pacos ENSVPAG00000011876 possible_ortholog 4 retrogenes
retro_vpac_333, retro_vpac_419, retro_vpac_652, retro_vpac_94,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1270 99.62 62.12
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Download FASTA sequences of all ENSRNOG00000021492 retrocopies