Parental gene:

RBBP4, ENSG00000162521

Aliases:RBBP4, NURF55, RBAP48
Description:retinoblastoma binding protein 4 [Source:HGNC Symbol;Acc:9887]
Organism:Human (Homo sapiens)
Coordinates:1:33116742..33151812(+)


>ENSG00000162521
ATGGCCGACAAGGAAGCAGCCTTCGACGACGCAGTGGAAGAACGAGTGATCAACGAGGAATACAAAATATGGAAAAAGAA
CACCCCTTTTCTTTATGATTTGGTGATGACCCATGCTCTGGAGTGGCCCAGCCTAACTGCCCAGTGGCTTCCAGATGTAA
CCAGACCAGAAGGGAAAGATTTCAGCATTCATCGACTTGTCCTGGGGACACACACATCGGATGAACAAAACCATCTTGTT
ATAGCCAGTGTGCAGCTCCCTAATGATGATGCTCAGTTTGATGCGTCACACTACGACAGTGAGAAAGGAGAATTTGGAGG
TTTTGGTTCAGTTAGTGGAAAAATTGAAATAGAAATCAAGATCAACCATGAAGGAGAAGTAAACAGGGCCCGTTATATGC
CCCAGAACCCTTGTATCATCGCAACAAAGACTCCTTCCAGTGATGTTCTTGTTTTTGACTATACAAAACATCCTTCTAAA
CCAGATCCTTCTGGAGAGTGCAACCCAGACTTGCGTCTCCGTGGACATCAGAAGGAAGGCTATGGGCTTTCTTGGAACCC
AAATCTCAGTGGGCACTTACTTAGTGCTTCAGATGACCATACCATCTGCCTGTGGGACATCAGTGCCGTTCCAAAGGAGG
GAAAAGTGGTAGATGCGAAGACCATCTTTACAGGGCATACGGCAGTAGTAGAAGATGTTTCCTGGCATCTACTCCATGAG
TCTCTGTTTGGGTCAGTTGCTGATGATCAGAAACTTATGATTTGGGATACTCGTTCAAACAATACTTCCAAACCAAGCCA
CTCAGTTGATGCTCACACTGCTGAAGTGAACTGCCTTTCTTTCAATCCTTATAGTGAGTTCATTCTTGCCACAGGATCAG
CTGACAAGACTGTTGCCTTGTGGGATCTGAGAAATCTGAAACTTAAGTTGCATTCCTTTGAGTCACATAAGGATGAAATA
TTCCAGGTTCAGTGGTCACCTCACAATGAGACTATTTTAGCTTCCAGTGGTACTGATCGCAGACTGAATGTCTGGGATTT
AAGTAAAATTGGAGAGGAACAATCCCCAGAAGATGCAGAAGACGGGCCACCAGAGTTGTTGTTTATTCATGGTGGTCATA
CTGCCAAGATATCTGATTTCTCCTGGAATCCCAATGAACCTTGGGTGATTTGTTCTGTATCAGAAGACAATATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAATGATGAAGACCCTGAAGGAAGCGTGGATCCAGAAGGACAAGGGTCCTAG

Library Parental gene expression (RPM)
bodymap2_adipose 91 .76 RPM
bodymap2_adrenal 97 .54 RPM
bodymap2_brain 113 .83 RPM
bodymap2_breast 83 .95 RPM
bodymap2_colon 80 .13 RPM
bodymap2_heart 55 .03 RPM
bodymap2_kidney 90 .89 RPM
bodymap2_liver 36 .06 RPM
bodymap2_lung 84 .88 RPM
bodymap2_lymph_node 106 .13 RPM
bodymap2_ovary 190 .32 RPM
bodymap2_prostate 102 .43 RPM
bodymap2_skeletal_muscle 66 .29 RPM
bodymap2_testis 173 .60 RPM
bodymap2_thyroid 114 .14 RPM
bodymap2_white_blood_cells 150 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005904 ortholog_one2one 2 retrogenes
retro_btau_1610, retro_btau_630,
Canis familiaris ENSCAFG00000010527 ortholog_one2one 1 retrogene
retro_cfam_1550,
Choloepus hoffmanni ENSCHOG00000004066 ortholog_one2one 6 retrogenes
retro_chof_1382, retro_chof_1649, retro_chof_1867, retro_chof_2116, retro_chof_2327, retro_chof_908,
Callithrix jacchus ENSCJAG00000001021 ortholog_one2one 7 retrogenes
retro_cjac_1157, retro_cjac_1787, retro_cjac_1873, retro_cjac_244, retro_cjac_2557, retro_cjac_2719, retro_cjac_2939,
Cavia porcellus ENSCPOG00000015352 ortholog_one2one 3 retrogenes
retro_cpor_154, retro_cpor_27, retro_cpor_899,
Equus caballus ENSECAG00000022784 ortholog_one2one 1 retrogene
retro_ecab_767,
Echinops telfairi ENSETEG00000020008 ortholog_one2one 4 retrogenes
retro_etel_1088, retro_etel_1462, retro_etel_1877, retro_etel_676,
Felis catus ENSFCAG00000027017 ortholog_one2one 1 retrogene
retro_fcat_1507,
Macropus eugenii ENSMEUG00000014379 ortholog_one2one 1 retrogene
retro_meug_1032,
Myotis lucifugus ENSMLUG00000000749 ortholog_one2one 2 retrogenes
retro_mluc_2275, retro_mluc_892,
Macaca mulatta ENSMMUG00000009940 ortholog_one2one 1 retrogene
retro_mmul_75,
Mustela putorius furo ENSMPUG00000015214 ortholog_one2one 1 retrogene
retro_mputfur_104,
Mus musculus ENSMUSG00000057236 ortholog_one2one 1 retrogene
retro_mmus_356,
Nomascus leucogenys ENSNLEG00000002805 ortholog_one2one 6 retrogenes
retro_nleu_1061, retro_nleu_1179, retro_nleu_1194, retro_nleu_1356, retro_nleu_1379, retro_nleu_2982,
Petromyzon marinus ENSPMAG00000007189 ortholog_one2many 1 retrogene
retro_pmar_26,
Pongo abelii ENSPPYG00000001588 ortholog_one2one 6 retrogenes
retro_pabe_1093, retro_pabe_2210, retro_pabe_2720, retro_pabe_2958, retro_pabe_3529, retro_pabe_3611,
Pteropus vampyrus ENSPVAG00000010981 ortholog_one2one 2 retrogenes
retro_pvam_1094, retro_pvam_902,
Rattus norvegicus ENSRNOG00000021492 ortholog_one2one 1 retrogene
retro_rnor_1270,
Sarcophilus harrisii ENSSHAG00000010923 ortholog_one2one 1 retrogene
retro_shar_399,
Ictidomys tridecemlineatus ENSSTOG00000012011 ortholog_one2one 1 retrogene
retro_itri_1168,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1305 88.32 100.00
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2. retro_hsap_2675 74.09 59.02
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3. retro_hsap_2814 87.67 51.65
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4. retro_hsap_3292 94.12 100.00
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5. retro_hsap_3600 88.09 67.32
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6. retro_hsap_3601 90.61 64.94
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Download FASTA sequences of all ENSG00000162521 retrocopies